RNA id: XM_036950860.1


Basic Information

Item Value
RNA id XM_036950860.1
length 2309
RNA type mRNA
GC content 0.48
exon number 14
gene id dctn2
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86249232 ~ 86276059 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGTCCACGCAAATCTCGCGAGATTGTAATGCTCGTCCGCTACTGAACAGTCGAGCTGTCAGAATACAGTTATTAAAATACAAAAGAAGCGCTTTATGTTAGGGAGTTGTTTGGCTACACAGGGTGAAAGGATCCCTTTTTTTGCTTGTTCATTTAGCTAGCGTTTTGAAAACGGACTAATAACTTTTATCCACAAGGTCCATCGTTATTTCAGGTATCTTTGTCACGTCTAAGGGGGTTTTTGTCTACTCATCCACCGGCCTCGTCCTTGTAACCTCAACAATGGCTGATCCCAAATACGCCAATTTACCTGGAATCGCGTCCAACGAGCCAGATGTGTATGAGACCAGTGACCTGCCAGAAGATGATCAGGCCCAGTTTGAGTCGGAGCTGGAAGAGCTGTGCAGTGACAGCGTGGAGAGGATCGTGGTCAACCCCAACGCAGCCTACGACAAGTTCAAGGACAAGAGGGTCAGCACTAAAGGCCTCGACTTCTCAGATCGTATCAGTAAGAACAAAAGAGTGGGCTATGAGTCGGGAGAATATGAGATTttGGCGGAGGGCTGTGGGGTGAAGGAAACCCCCCAGCAGAAGTACCAGCGGCTGGTTAATGAGATCCAGGAACTCAGTCAGGAGGTGGAGACCATCCAGGCGACCACACGGGACAGCAGTTCAGAGGAGCGTCTGACTCCTGTCGTCCTCGCTCAGCAGGCTGCCCAGCTCAAACAGCAGCTGGTCTCTGCCCACCTGGACTCACTGCTAGGACCACAGGCACATATTAATTTAGCTGACCCAGATGGAGCACTGGCCAaaCGTCTGTTAACCCAGCTGGAGGCAGTGAGGGGCAGTAGGGGCAGTACAGGGGAGGGGAAGGCCCCAGCAGCTAAAGGTCCTGACGGTGTGGTGTTGTATGAGCTACACAGCCGGCCAGAGCAGGAGAAGTTCACAGACGCTGCCAAGATGGCAGAGTTGGAGAAGAGACTGTCAGAGCTGGAGACTGCTGTGGGTTCTGGATCAGACAAACCGGGACCTCTGAGTGCTGGGGTGCAGGGAGGCAGTCTCATGgacacTATGGAGCTGCTGCAGGCGAGGGTCAGTGCTCTGGACTCAGCCACTCTGGACCAGGTGGAAGCCAGGCTGCAGAGCGTCCTTGGAAAGATGAATGAGATTGCAAAGCACAAAGCAACCATTGAAGATGCTGGCACACAGAACAAgGTGTCTCAGCTGTATGACGTGGTGCAGAAGTGGGACGCCATGGCAACCTCTCTGCCCCAGGTGGTGCAGAGGCTCATGGCTGTCAAGGAGTTGCATGAACAAGccatgCAGTTTGGTCAGCTGCTGACCCACCTGGACACCACCCAGCAGATGATCAACAACTCTCTGAAGGACAACGGGACACTGCTCTCACAGgTTCAGACAACCATGAAGGAGAATCTCTTGTCTGTAGAGGAGAACTTTGCAGCTCTGGACCAGAGAATGAAGACTCTCAACAAATAAATCTGGtttctttattaaaaaaaaaaaaaaacgtctgtCAGGACAGTTGGGCAAATTGAGGGAGTGGAGGatcttatctctctctgtatctcttccACGTCAGCCTTCTTTTTTTTCCTGCAAAGTGGAATGTTTTGATTTGAAagtataaaaaaagaaaaaaccgGACAAAAAAAAGCTCAAATGGCCACCAAATTTTCttgatttatttttctccttttccACATCTCTCCATTTGAAGTCTTTAATTTAGTATCAAATGCAATGCATTACacccacatatatatatatatattatccctTCAAAGCTCGCTGGCTTTTTCGCAATGAAAAATATTTATCCAGATCCTTTCAACCTCTTCATCCACACTAGTTGTAGTTCTGTGCTACAACATTCCGCTAAGTCATTTCATTGAATGTCCCAATTTTGAGGGCTCAAGAAGTGGAATAGCCATGTTGTCTACAACATTACTGCACAAAAACAAACAACCAATGCTGATTTATCCACCCTTTTCCTGAAGTATACACTTTTGCACACTTCCTGTTGTGGATTTAACAACGGTGGAAAAAGTCCCTCCCTCTAATCCTTACACCAATACAATGACGGGAAGTGTGctagtgcacactttgggagaagGGTGAAGAATCGGGACGCGTCGTCAACCAGAAAGACGATGTATGGACATGTagcagtgtgtgttggggggggccTGAAGTCCCGGAGGGATGCTTGTAAATATGCCTGTGTACCTTAAATGTTTCATGCTCAGTTGCTTGTAACTTATTATTATTGTGGCTGAGACTAAAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1715877 lncRNA downstream 56835 86190858 ~ 86192397 (-) True G1500748
TU1715857 lncRNA downstream 89355 86158498 ~ 86159877 (-) True G1500728
TU1715846 lncRNA downstream 112005 86135194 ~ 86137227 (-) True G1500717
TU1715831 lncRNA downstream 137474 86110908 ~ 86111758 (-) True G1500710
TU1715821 lncRNA downstream 142762 86105132 ~ 86106470 (-) True G1500702
TU1715905 lncRNA upstream 4402 86280460 ~ 86281241 (-) True G1500774
TU1715906 lncRNA upstream 5831 86281889 ~ 86282188 (-) True G1500775
TU1715947 lncRNA upstream 133169 86409227 ~ 86409700 (-) True G1500814
TU1715948 lncRNA upstream 140079 86416137 ~ 86416473 (-) True G1500815
TU1715951 lncRNA upstream 145285 86421343 ~ 86421546 (-) True G1500818
XM_021570109.2 mRNA downstream 6241 86236554 ~ 86242991 (-) False LOC110494779
XM_021570110.2 mRNA downstream 6241 86236554 ~ 86242991 (-) False LOC110494779
XM_021570111.2 mRNA downstream 6241 86236554 ~ 86242991 (-) False LOC110494779
XM_036950854.1 mRNA downstream 65627 86118575 ~ 86183605 (-) True LOC110493286
XM_036950856.1 mRNA downstream 92473 86118575 ~ 86156759 (-) False LOC110493286
XM_036950865.1 mRNA upstream 264741 86540799 ~ 86555989 (-) True igsf8
XM_021570138.2 mRNA upstream 329882 86605940 ~ 86610581 (-) True sp7
XM_036950866.1 mRNA upstream 397394 86673452 ~ 86697487 (-) False tespa1
XM_036950867.1 mRNA upstream 397394 86673452 ~ 86697487 (-) True tespa1
XM_021570514.2 mRNA upstream 435395 86711453 ~ 86714926 (-) False LOC110495202
TU1715872 other downstream 6304 86239718 ~ 86242928 (-) True LOC110494779
TU1714519 other downstream 961115 85286656 ~ 85288117 (-) False G1499684
TU1714522 other downstream 961115 85286656 ~ 85288117 (-) True G1499684
TU1714505 other downstream 1026113 85221125 ~ 85223119 (-) True G1499671
TU1713103 other downstream 2191840 84051010 ~ 84057392 (-) True G1498522
TU1715969 other upstream 173621 86449679 ~ 86450734 (-) True G1500834
TU1716092 other upstream 522007 86798065 ~ 86806531 (-) False LOC110493290
TU1716093 other upstream 522007 86798065 ~ 86806531 (-) False LOC110493290
TU1716920 other upstream 858000 87134058 ~ 87159244 (-) False G1501650
TU1717031 other upstream 1118722 87394780 ~ 87395835 (-) True G1501745

Expression Profile