RNA id: XM_036950866.1


Basic Information

Item Value
RNA id XM_036950866.1
length 3183
RNA type mRNA
GC content 0.52
exon number 13
gene id tespa1
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86673452 ~ 86697487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGTTACGCAGGGAGGATGTATGTCACAAGTGTTTCACACGCTCTTTTTTTTCTTAAATTGAAACCACACGAACTTCCTTTTCTACCTTCCTTGTATTGTATTTGCGCGTCAAGAGACAGTCAGAGGAGTTGACAGCAATGATGTATATATTATACACATTGGTTTGAGAAAGAGAGGCGCGAACATGTAGCCTAGGCGTTGTGTTGATAAAGGTTGAAACATTTATCCAGGATGAACCGTTCCAGTAAATTGTCATCTGAAAAACAGACGAAAACCTGGATGAAATATGGAGTGCTATGCTGACAACAAGATGCAACTCGAGACCGGTGAGCGTAGTGGGAGAAACCAGAATTGAAACCTGCGGTGCTTCAGTGAAGCCGTCTTGTCTGAAGAGGATCACTGTAACGCAGACggagggagtcaggaagcaggtgcagtcgccccccccccaccccctcatctGATGGAGAGGCCGTCTTCTACAACCAGGCGTCAGGCCTGGTTCCAGACCGGTCGCCAGTGGCCTACCCTGAAAGAACAAGATCCACAGGgacctccatccacccacccgtCTGTTCCACACCAGTCTGCATCAGAGGATGATGTCTTCTCAGATGGATGCTCAGCAGGAAAGATTGAGAGCTGGCTGCTGGGCTGTGGGCGGGAGACGGACTCAGAAAACTCTAGACATAATCTGACTGTTGaGTCTCTGCTGAAATCAAAAAGTTTTGAAGATGACCTGAGTCTGGGGGCTGAGGCTACAGTATTAGATGTTGAGGAAGGCGTCTCAGAACTGAGCAGCTGCCCACTGCTGTTTCCGCCACCCAAACATCCTCACAGAGGAGTCACCACCAGTACTCCCCGCCAGAGACTGGCTCTGCCCCTTCTCCACCTGGGTCACAGTCTGGCCTCCAGTGGGCTCTCCAAAAGCACCAGTAAAGCCTCGAGtgTGTCGGAGGCCCTGCAGATGTGTGCGGAGGATGCAGAGGAGACTCTGTACCAGTTAGGGTTTGGTTGTGATGAGCCTGAGGTGACGGCCCGTATCCCTATCCGCTTCATCAACTTCCCCTCCCATGCCCACGGCATCAACCTCCGCCTCTTTCTTCAGTCCCAACTGCACCGGCTCCGACAGGAGGACCCAGGACTCTCCCTGGCCAGCCGTTTCAGGCAGGTAGAGGTGCTGACAGCCATGGCCAACGCCTTCTACTCCCTCTACTCACACGTGTCCCGCACGCCCCTCCAGAAGCTCGCCCCTCCTGAGTTCAGCTTCTCCCCCACCGCTGACGGGCAGATTGGACGGCGCTTCATGGGAAGTGTCCGCAGCGAACCGAGGTCTCCAGTGGAACGACTCAAGGATACGGTTTCTAAGATGTGCCTGTATACTGGCTCTGGGGCTTCTGCCCGGCTGGGGTCGGACTCTGCCTGCCCCAGACCAGGACTCTCCCCCGGGCCTGGGTCGGCACCCAAGAAGAGAAGCAGCCTTCCTGACTTGGTGGGTCTGGTCCTGGAGAACACCAAGGCAGAGCCTTTAtccagagacatggaggaggataATCAGGATACAGGGAACAGTAATGAGACGAGTGCTGCTGTGGACACGatggtgagcgagagagagacagagacacagggacacacagacggggagggggagcaggggtTGTTTTCAGATGTACAGGATATGGACACTGGGGATAGTAACAAGACGTGTGCTGTGGGCACACGTATGTtccgggacagagagacagagacaccggGACATAGAGACACAGTCAGGGACAAGGAGTTGGAGCAGGGATCGTCATCAGATGGGAATGGAGTTGAtttagagagagagcgacatcCTGACAGAACACCCAACTTTGGGGCATCATCACTTTCAGAATCAGGTCATCAAAGAGAGCCCAGTAGTAGGAAGAAGCTGGACTTTGGCCTTACTACTCCAAGACCTACTTGTGAAGTTGGAGAAACTCAAAACACAATTCATCCCACGGGCTGGGCAACAGTAGTGGCACCGGTCGCCAAGGTTACCCGTGACATCACCCGTCCTCCGATCGTTGAGTGTGTTCACCAGGCTCCGTACGGCAGTCAACTACAACAGTGGAATAGTAACACGCAGGCGGAGGACATTTTGTCCTCTGAGAACGTCAGAAGATCTGACCGATCCTTCACCACGTCAGACGGACTTCACAAACCTAGGGAGAAGGATTTCTTAACCACCAGTAACTCAGCCAAGAGTTTAGAGGTCGCAGTAACTCCCATGTCTAAGGTGGAGTCTAGTTTGGGAGAAGCTGGAACACTGGTTGTGTCAACGTTCGTGTCTATGGAGCTCCTTAGTTGCAGGAAGTCCCCTTGTCTCATCACTGTTACTGATGTGACACCTTCTAGTTCTTTAGACACAGATGCACCTGAGATGATTCTCCCTGCCAGTGGTGGGACCACAGTGGTGCCTCCAGCAGCCCAGTATTATCCAGGTGTATGGAGGAACAAGAGGTACCTGAGTCCTCTGAAACCAACACCGCTCCAGGGGCAGGTCTCCCACACTATTCAACAGGCCAACTCCTTTGAGCTGGAGGAGGTACAGAGCGCAGGGGAGGAAGACTTTGGACAGCAAGAAACTATAAGGTCAACATCTTTGTCCCGGTCCACTGTCAATCAAAACAAAGGTCTGGTGGTTCGAGGGGACAGCATGCAATCAGACAGTAGTGGCTACGCTGATGACGACGTCGACTCCCCTGACAGAGACAAGAGCTGACGAACAGGACCCTCGGGGAAATAAACTCCGGGAGCTATTATTTACATGAGTCACACAAACATATTGAGCCACTGAAGGTACAGTCAGATACAGACTGTTATTGTGAATGACATCATGAAATCCGGTGGCATTCTGACTACGCCCACTTCGACGTCACACTAGTGCTTCAACCGAGTTCAACGTTGACTTCCGTTGGTAAACGCATTGCCCACGTAGGCATATTTAACACACAGATCAAGTTTCCTAACCTGACGCGCAGGCGTTGTGTGCCAGACGATGCAATGTGGTTAGCCGACATGTTTAAATACTTGTCCAGGCGCTGTAAGATCTGGCATGAGTCTTCAGTGTAAGTCGGACAGGAACTCAACCCTTCGGTTCGATTGTGTAGACTGTCTTGTGTCCAGTGTTTCTGTTGACAGTCATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1716061 lncRNA downstream 99 86671547 ~ 86673353 (-) True G1500913
TU1716035 lncRNA downstream 58096 86613680 ~ 86615356 (-) True G1500889
TU1716022 lncRNA downstream 93772 86575582 ~ 86579680 (-) False G1500879
TU1716023 lncRNA downstream 93772 86575582 ~ 86579680 (-) True G1500879
TU1716008 lncRNA downstream 129465 86543287 ~ 86543987 (-) True G1500866
TU1716096 lncRNA upstream 5902 86703389 ~ 86781368 (-) True G1500941
TU1716059 lncRNA upstream 11208 86708695 ~ 86711199 (-) True G1500911
TU1716114 lncRNA upstream 35183 86732670 ~ 86733096 (-) True G1500958
TU1716098 lncRNA upstream 91041 86788528 ~ 86790791 (-) True G1500943
TU1716089 lncRNA upstream 100578 86798065 ~ 86806531 (-) False LOC110493290
XM_021570138.2 mRNA downstream 62871 86605940 ~ 86610581 (-) True sp7
XM_036950865.1 mRNA downstream 117463 86540799 ~ 86555989 (-) True igsf8
XM_036950861.1 mRNA downstream 397393 86249232 ~ 86276059 (-) True dctn2
XM_036950858.1 mRNA downstream 397394 86249232 ~ 86276058 (-) False dctn2
XM_021570514.2 mRNA upstream 13966 86711453 ~ 86714926 (-) False LOC110495202
XM_021570515.2 mRNA upstream 13966 86711453 ~ 86714926 (-) True LOC110495202
XM_021570132.2 mRNA upstream 43061 86740548 ~ 86774465 (-) False LOC110494797
XM_036950872.1 mRNA upstream 43061 86740548 ~ 86774465 (-) True LOC110494797
XM_036950888.1 mRNA upstream 103466 86800953 ~ 86850473 (-) False LOC110493290
TU1715969 other downstream 222718 86449679 ~ 86450734 (-) True G1500834
TU1715872 other downstream 430524 86239718 ~ 86242928 (-) True LOC110494779
TU1714519 other downstream 1385335 85286656 ~ 85288117 (-) False G1499684
TU1714522 other downstream 1385335 85286656 ~ 85288117 (-) True G1499684
TU1714505 other downstream 1450333 85221125 ~ 85223119 (-) True G1499671
TU1716092 other upstream 100578 86798065 ~ 86806531 (-) False LOC110493290
TU1716093 other upstream 100578 86798065 ~ 86806531 (-) False LOC110493290
TU1716920 other upstream 436571 87134058 ~ 87159244 (-) False G1501650
TU1717031 other upstream 697293 87394780 ~ 87395835 (-) True G1501745
TU1717411 other upstream 1464791 88162278 ~ 88175346 (-) False dnsl3

Expression Profile