RNA id: XM_036950891.1


Basic Information

Item Value
RNA id XM_036950891.1
length 3502
RNA type mRNA
GC content 0.57
exon number 16
gene id LOC110493290
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86798065 ~ 86880836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGCACTCCGCAATATAAAATCTGCAGGGGCTTGGAGAGAAGGGACCGCTCCAAATCACATATTTTCACCTCACAGCAAGTCTGAAGAAAGGGAAATCAAATACATGTGATCAAATCACCGGCCGGACCGGGATAGAGATTTAAGGTTATAAAGATCGGGTTGAAATGAACGAAGGATGGACTCTCCATTGCTTCCATCGCTAGTGCCCATTCTAGAACAGCGAGTGCGTGCAGCAAAGAAAATTGGATGCTGAGCTGAGTCGCGCGCGGTGACACTGATTATATCAACAAAACGAGGAAAGCAGAATAATTGCGCTGTTTTAGAATGCTGCATCGAGAACAAATTAAATAAATAGCAGCCTATGTGAAATATATAATCAACAACAATGGAGTTTGAGACTTGAGGTTGCTGCATTTGCTAAGGTCTTGCTTCGTCGCTGGCCCTGACTGATCAACAGTCCCGGGGTTCTTCCTGTTCCCCTGACCAGAGCTCCCCATGGCCTGTATCACAGAGTCCCGCgccccgtccccctctctctccgggTTCAACACCCCCCTCTCAGAACACACCCCTACCTTCCGGGGCCGGCTGGACGAGACACCCGCCTGCACCCCTGAGATGGATCTGACCCCCACCCAGTGTGTCCTACGGAACGTACTATCTATAGACACCGGGGGTGCCCCAGAGCCCGACGGCGGGGGAGGTGGAGGTCATAATGGTGAACACACCTGTGGGGGCCACAGCCCCACGCCTAGCGAGGAGCAGCAGGAGCACTTTGCCAACAGTGTGCTGAAGCTCCATGAgaacggggagggagggggtaggatggagggagagggccaTGATGCGGAGGGAGGAGCGGTGCGGAGCCAGGCTGAGGATGTGAGGCTGCTGTCGGGAGGAAGTGGAGGGTTTCTGGAGGGACTGTTTGGGTGTCTGAAGCCGGTATGGACCATGATCGGAAAGGCCTACTCCACCGAACACAAACACAACCTGGAAGagcTCTGGGAGGTGCCGTTTGAGGACATCTCTGAGCTGCAGTGGGTAGGGAGCGGGGCCCAGGGGGCCGTCTTCCTGGGTAAACTCCACGGACAGGAAGTAGCTGTGAAGAAGGTTCGAGACATCAAGGAGACAGACATCAGACATCTGAGAAAACTCAAACACCCCAACATCATCACCTTCAAGGGTATCTGCACCCAGGCCCCGTGTTACTGTATCCTGATGGAGTACTGTGCCCAGGGCCAGCTGTACGAGGTGCTGAGGGCGGGTAGGAACATCACCCCCTCCCTGCTCATCGACTGGGCCATGGGCATGGCTGGAGGCATgaactacctccacctccacaagaTCATCCACAGAGACCTCAAGTCGCCCAATATGTTGATCACCTATGATGATGCAGTGAAAATCTCTGACTTCGGGACGTCTAAGGAGATGAGTGATAAGAGCACCAAGATGTCGTTCGCCGGTACGGTGGCCTGGATGGCCCCAGAGGTGATCAGGAACGAACCTGTATCAGAGAAGGTCGACATCTGgTCGTTTGGTGTGGTGCTATGGGAGATGTTGACCGGAGAGGTACCGTATAAAGACGTGGACTCCTCAGCCATCATCTGGGGGGTGGGAAACAATAGCCTGAACCTACCTGTCCCAGAGAGCTGCCCAGACGGATTCAAGATACTGCTGAGACAGTGCTGGAGCAGTAAGCCCAGGAACAGACCTTCATTCAGACAGATCCTCCTGCACCTGGACATCGCCTCCGCTGACCTGCTGTCTACCCCACAGGAGACATACTTCAAATCTCAGGCAGAGTGGCGTGAGGAGGTGAAGCAACACTTTGAGAAGATCAAGTCAGAGGGGACGTGTATACACAGACTGGACGAGGAGATGATTATACGACGCAAGGAGGAGCTCAGaCATGCCCTGGATATACGCGAGCACTATGAGAGGAAGCTGGAGAGAGCCAACAACCTCTACATGGAGCTCAACGCCGTTATGCTACAGCTGGAACTCAAGGAGAAGGAGTTACTCAAGAGGGAGCAGTCACTGGATAAGAAGTACCCAGGATGCATCAAACACCACAGCTCCAGACAGGAACGCTCGTCCAACTCCATGGAGAAGCTCATCAAGAAACGCAACGTACCTCAGAAACTTCCCGCGCACAGCAAGAGTAGACCAGACCTGTTAAAGTCAGAGGTGATCCTTCCCAAGCTGGACTCCTCCATGACTCAGGTGACCATCCCCTCATGCCCCCAGAAGGGATCCACGTCCCCGGGGAGGTCACGTCGGGCCAAGCCCCGCTACAGGAAGGCAGGGAAGGGCAGCAGTGGAGACCTAGCTGGGCTGAAGGCTGCGTTATCGTCCACACTGGGCCTGGCTAATACTACGTCTCTGACCACCTCCACACCCAGCAAGCAGCATCTGGACCCCAGCGCAGCTCTGAGAGGTCTCCAGCATGATCTGCTGCTGAAGAAGATGTCCTCGTCCAGTCCAGACCTCATCTCTACCACCATGGAGGCAGAGGGTCGCCGCAGGGGACTGGAGAGACCTGGTCTGGAGAGAGGGGGTAGCCAGAGCGCCTCCGCAGGCCTAGGAGGAGgtggaggaggaggtggtggaggagggacggaggatggaggggtggggacAGATGACCAGACAGAGACCCCACCGCGTAGCAACACTCCCAGCGAGGACGCGGCCTCCATACCGTTCTCCAGCAGCCCAGACTCCCCCTGTGGGAGGGGGGCAGCGGCAGGGAGGGGGTCGGTGCTGGGAGGCCCAGGAAGGTTACTTCAGGACGGGGAGGACAAGGAGGAGTGCACAGGGATCATCAGGTCACCCAGGAGCCAACACCTCACACCTGCAGCCCTGCTCTACCGGAAACAAGTCACACGCAAACAGAGACGTGGTGTGtcctcagaggaagaggagggagaggtggacagTGAGGTGGAGTTACCACGGAGACGTCGACCGGTAAGCATAACCAAGTGCCAGTCCCTGTCCACCTTCAGCTCTGAGAACCTGTCTGCCGTGTCCGTGTCGGACGGAGAGGAGGGCAACACCAGTGACCACTCCCACAGCGGCACGCCGGACGTGGTCAGTACCAACACAGACGAGCGGCTGGACGACAAGAGCGACGACCTTCTGTCCCAGGGGTCGGAGATCCCTGCCGACCCCGCCCTCGACCCGGCCGACGGTTTATCAGAGAAGGAGGCCGCCATACGCCAGGTCAAGACCCAGCTCAACACGGGGCAGAACTATGAGGGCCTGTATGATGACTCTGACTGTGACAGTGCAGAGCTGGACCACTCAGGCTGCACAGAGCCCCAGCACCATAGGCCCCCCAGCACCAACTGGTGAGGAGACCAGATGCAGATCTTAGCCCCACTCCCAAACTCTACTCCCCAGCCCTACTCCCCCAGCCCTACTCCCCCAGCCCGACTCCCCCAGCCCGACTCCCCCAGCCCTACTCCCCCagccctactccccatcccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1716098 lncRNA downstream 10162 86788528 ~ 86790791 (-) True G1500943
TU1716096 lncRNA downstream 19585 86703389 ~ 86781368 (-) True G1500941
TU1716114 lncRNA downstream 67857 86732670 ~ 86733096 (-) True G1500958
TU1716059 lncRNA downstream 89754 86708695 ~ 86711199 (-) True G1500911
TU1716081 lncRNA downstream 106646 86693876 ~ 86694307 (-) True G1500930
TU1716147 lncRNA upstream 6468 86856941 ~ 86857199 (-) True G1500991
TU1716154 lncRNA upstream 7620 86858093 ~ 86858335 (-) True G1500995
TU1716156 lncRNA upstream 11235 86861708 ~ 86861979 (-) True G1500997
TU1716157 lncRNA upstream 12766 86863239 ~ 86863579 (-) True G1500998
TU1716189 lncRNA upstream 110392 86960865 ~ 86961581 (-) True G1501030
XM_021570132.2 mRNA downstream 26488 86740548 ~ 86774465 (-) False LOC110494797
XM_036950872.1 mRNA downstream 26488 86740548 ~ 86774465 (-) True LOC110494797
XM_021570514.2 mRNA downstream 86027 86711453 ~ 86714926 (-) False LOC110495202
XM_021570515.2 mRNA downstream 86027 86711453 ~ 86714926 (-) True LOC110495202
XM_036950867.1 mRNA downstream 103466 86673452 ~ 86697487 (-) True tespa1
XM_036950893.1 mRNA upstream 99737 86950210 ~ 87033989 (-) False col2a1b
XM_036950896.1 mRNA upstream 99737 86950210 ~ 87034104 (-) False col2a1b
XM_036950895.1 mRNA upstream 99737 86950210 ~ 87034105 (-) True col2a1b
XM_036950903.1 mRNA upstream 410020 87260493 ~ 87296463 (-) False LOC110494790
XM_036950904.1 mRNA upstream 410021 87260494 ~ 87296463 (-) False LOC110494790
TU1715969 other downstream 350219 86449679 ~ 86450734 (-) True G1500834
TU1715872 other downstream 558025 86239718 ~ 86242928 (-) True LOC110494779
TU1714519 other downstream 1512836 85286656 ~ 85288117 (-) False G1499684
TU1714522 other downstream 1512836 85286656 ~ 85288117 (-) True G1499684
TU1714505 other downstream 1577834 85221125 ~ 85223119 (-) True G1499671
TU1716920 other upstream 283585 87134058 ~ 87159244 (-) False G1501650
TU1717031 other upstream 544307 87394780 ~ 87395835 (-) True G1501745
TU1717411 other upstream 1311805 88162278 ~ 88175346 (-) False dnsl3
TU1717412 other upstream 1311805 88162278 ~ 88164542 (-) True dnsl3
TU1717937 other upstream 1507679 88358152 ~ 88425505 (-) False G1502489

Expression Profile