RNA id: TU1716093


Basic Information

Item Value
RNA id TU1716093
length 3571
RNA type TUCP
GC content 0.44
exon number 5
gene id LOC110493290
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 86798065 ~ 86880836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGACAGAGACCCCACCGCGTAGCAACACTCCCAGCGAGGACGCGGCCTCCATACCGTTCTCCAGCAGCCCAGACTCCCCCTGTGGGAGGGGGGCAGCGGCAGGGAGGGGGTCGGTGCTGGGAGGCCCAGGAAGGTTACTTCAGGACGGGGAGGACAAGGAGGAGTGCACAGGGATCATCAGGTCACCCAGGAGCCAACACCTCACACCTGCAGCCCTGCTCTACCGGAAACAAGTCACACGCAAACAGAGACGTGGTGTGtcctcagaggaagaggagggagaggtggacagTGAGGTGGAGTTACCACGGAGACGTCGACCGGTAAGCATAACCAAGTGCCAGTCCCTGTCCACCTTCAGCTCTGAGAACCTGTCTGCCGTGTCCGTGTCGGACGGAGAGGAGGGCAACACCAGTGACCACTCCCACAGCGGCACGCCGGACGTGGTCAGTACCAACACAGACGAGCGGCTGGACGACAAGAGCGACGACCTTCTGTCCCAGGGGTCGGAGATCCCTGCCGACCCCGCCCTCGACCCGGCCGACGGTTTATCAGAGAAGGAGGCCGCCATACGCCAGGTCAAGACCCAGCTCAACACGGGGCAGAACTATGAGGGCCTGTATGATGACTCTGACTGTGACAGTGCAGAGCTGGACCACTCAGGCTGCACAGAGCCCCAGCACCATAGGCCCCCCAGCACCAACTGGTGAGGAGACCAGATGCAGATCTTAGCCCCACTCCCAAACTCTACTCCCCAGCCCTACTCCCCCAGCCCTACTCCCCCAGCCCGACTCCCCCAGCCCGACTCCCCCAGCCCTACTCCCCCagccctactccccatccctactccccaGTCCTACTCCCTCAGCCCTACTCCCCAGTCCTACTCCCCCAGCCCTATTCCCCCAGCCCGACTCGACAGATCTGTTTCTGCTTCCTTGCCAACTCCTTTGGTCATTATAACACATAAACTGGTCTTAGACCATGCTGACACTCCCCAAACCCAACCTTGCAAAAACACTTCAACTCACCTCACCTACAGTGACCTCTGCACCACCAGACAATTGATATAATGTCTACATGTTGTAGTGATTCCTTCACTATCCACCCTGTGGTTTCTTACTTCTTGATtttgtaaacaaaaacaaaaaaataactttttaaaAAGTGTCATATTTCAACATCTACCTATGTAATGTCTCCCGTTCAGATTTCACAATATGAGTGTCATTACACCTTCCAATTGTCAATGTCCACATCAACGGTGAGGCAcctaatgttttttttgtttttttgcactTAATGTTTACTTCATTTGTAGTGATTATTTATGTTCAAATTCCTGTGTTTCCTCACCAGCATTATGCACTGAGTgtcatttcatttatttattgagTACAAGAGAAAATCAATGTCTACATTATTTTTTAAGTTGTTTACAATGTCACGTATTTATTGTTTTGCATCAGGGATTTTGTTGTCCTAATTTTGTatacaatttgtattttatttatgttAACATTAACTGTATGTAAATATCTGACCTCTTGACACATTATACAAGGAAGAAATATCATTTGTATGAGTTAAAAATGTTAATCACTGTATCATGTAATGGTGCTGACTGATGTTTTACACTAGAGGGCGTTATTGCATTGTACCAGACAGAACAGGGGTGTATTCATAACGGAAACCGTTGTGCAACGAAAAACAAGactttctattggacaaattcaggtaggtcccctccccgtttcattccgtttgcttccgtttggcTCCTAGAGTACACGGTAAACGGTTTCCGTTGCAGAACTGGGTCGCGTTAAGCAGGGCACGACGTTGTGGAATGCTCAGATAGAAAAATGTTATATAGAACAAGCATGCCTCTCTGACAACAAAGAAATCATGTCAGCTCTATTCATGACATTTCTATCCGAAACGTTCAACAGTTGCCTACTGAATCTGAACATAGATATTCTATAACATAGAAATTCTATTTGGTCTGGTACCGGATGCTGTTCATAATGACTGGGCATTAGTaaaagcatagaaatagaatctaaCCGAGTGCTTCTATTTCTATGGCATTAAGACACAGGCTGGAGAACAGAACAATAATAGCTAAAGAACAAGCAATATGTCCACAAACTCAGAATCATTCCCCTGGCTACAGCATGGAGCAAAACTAACCTATAGCCCAGCCCCTTTCTTTCAGGGTCGGTCTTGACATGTTTTTTTGTAGATCAACTATTGTATTTCTTTGGTATTgcagtgtttatactgtattaaaaTGCAATACCACCTACTAGGATACCTTTGAGAACAAAACCTCAGGTCAAATCTCAAATGGCATCCTTATCTatatatatagtgccctacttttccCCACAGCTTtgggtcaaaagtagcgcacttcttaaggaacagggtgccattagggCCGAAACCTCGGTCACAGACCATGTGCATCTAGAAGTGTACAGATAGATCACTAGAGCATGCTTGTAATATAGTATGTATGCGTTGGATTGTATTTCCTGTCCAAATGCAGATGTCAGTCAGAGCATGAGGCTCAGATCAAAGGGACTTATCACCCATAGAAACAGAATCTAAATGGATTCTAGTTCTATGACATCACCACCACTCACctatctatccatctctatggaaaCTATCCAACTCAACAGCAACAGATGAGTTTGTTCCTAACTAGTTACCTGGCAACTAGTTAGTTCCCTGTCAACTAAAGGTTGCATCCCGATTCTCCACCCTTCCCTAAATGTGCACTTGTTCATTTCCGTTCATGGATTGAAAAGGAAAGGACTGGATTAAGAAATATGGTGGAAACCCCCATCAACCAGACCAATTTTTTGTTTTGATCCACAGGGAGGAGTGTGAAAGTGTAAACTTGGGCAGAACTGGGACACAATAGAGGCCCATGTTTGAACAGTCTCCATTAAATCCTCTGTAGCATTGAGGATTCCACTCCAACTTCACAGTCCACTCTATCGGGATGACTCAGCAGGTTCCATTTGATAAGCTATAAAATGGCAGCTCCTTAATATATTAAGGTTTTATAGTGTTTCTTTTGAATGTTCTGATCTCAGAATGTATTCTGTCCCATCAAGTCAAGCATTAACTTCATTAACTACTAGGTCTTATGCTGAATGACATCCAGACAGATGTCATCAAACGGATAAATAATTCATCATTTTGTTGCCAATACAGCAAAAAGATCAATGCCCTCTGGTGACTGGAGAAATAGAGGGTCATTCTTGTATGTTTTCaaattagcctggtcccagatctgtttattaGTATCGTCTTactaactcctatggtcattgtcaggAACACCAACGTTTGGCAAGAGCGGTACAAACAGATCTGTGATCAGGCTCGTTTCCGTAATGCTGAATCAAAAAACAGACTCCTACTTTATAAAAAAGATAGAAAAAAAAAGAACTGTTTGTTTTATATTGCATTATGTATTGTATCTGTGTACAATAAATATATTTAAGAAGCAAATTAAGAAATAAATAAAACGACTCACTGTTCAAAAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1716098 lncRNA downstream 7274 86788528 ~ 86790791 (-) True G1500943
TU1716096 lncRNA downstream 16697 86703389 ~ 86781368 (-) True G1500941
TU1716114 lncRNA downstream 64969 86732670 ~ 86733096 (-) True G1500958
TU1716059 lncRNA downstream 86866 86708695 ~ 86711199 (-) True G1500911
TU1716081 lncRNA downstream 103758 86693876 ~ 86694307 (-) True G1500930
TU1716130 lncRNA upstream 1054 86807585 ~ 86808139 (-) True G1500974
TU1716140 lncRNA upstream 30376 86836907 ~ 86837571 (-) True G1500984
TU1716142 lncRNA upstream 39906 86846437 ~ 86846926 (-) True G1500986
TU1716095 lncRNA upstream 41083 86847614 ~ 86850470 (-) True LOC110493290
TU1716147 lncRNA upstream 50410 86856941 ~ 86857199 (-) True G1500991
XM_021570132.2 mRNA downstream 23600 86740548 ~ 86774465 (-) False LOC110494797
XM_036950872.1 mRNA downstream 23600 86740548 ~ 86774465 (-) True LOC110494797
XM_021570514.2 mRNA downstream 83139 86711453 ~ 86714926 (-) False LOC110495202
XM_021570515.2 mRNA downstream 83139 86711453 ~ 86714926 (-) True LOC110495202
XM_036950867.1 mRNA downstream 100578 86673452 ~ 86697487 (-) True tespa1
XM_036950893.1 mRNA upstream 143679 86950210 ~ 87033989 (-) False col2a1b
XM_036950896.1 mRNA upstream 143679 86950210 ~ 87034104 (-) False col2a1b
XM_036950895.1 mRNA upstream 143679 86950210 ~ 87034105 (-) True col2a1b
XM_036950903.1 mRNA upstream 453962 87260493 ~ 87296463 (-) False LOC110494790
XM_036950904.1 mRNA upstream 453963 87260494 ~ 87296463 (-) False LOC110494790
TU1715969 other downstream 347331 86449679 ~ 86450734 (-) True G1500834
TU1715872 other downstream 555137 86239718 ~ 86242928 (-) True LOC110494779
TU1714519 other downstream 1509948 85286656 ~ 85288117 (-) False G1499684
TU1714522 other downstream 1509948 85286656 ~ 85288117 (-) True G1499684
TU1714505 other downstream 1574946 85221125 ~ 85223119 (-) True G1499671
TU1716920 other upstream 327527 87134058 ~ 87159244 (-) False G1501650
TU1717031 other upstream 588249 87394780 ~ 87395835 (-) True G1501745
TU1717411 other upstream 1355747 88162278 ~ 88175346 (-) False dnsl3
TU1717412 other upstream 1355747 88162278 ~ 88164542 (-) True dnsl3
TU1717937 other upstream 1551621 88358152 ~ 88425505 (-) False G1502489

Expression Profile