RNA id: XM_036950899.1


Basic Information

Item Value
RNA id XM_036950899.1
length 3971
RNA type mRNA
GC content 0.51
exon number 31
gene id nckap1l
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 87134096 ~ 87172285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGTGCACTTGTCTTCGAGTCTGGCTGTCACAGACTGTTTCCTGatctgaaggagaggagacagaccagggccGTAACAGTAGGGGGGAGAGGAGCATCATGGCCATGGCTTACCAACAGAAGCTAGCTGAGAAGCTCACCATCCTCAACGACAGAGGGACAGGGGTGCTGCTGCGTATGAACTACATtaagaagACGTGCTTGGATCCCAAGCTTCGGCCACAATACCTGACAGACAAGACCATGGAAGCATCTGTCAAATACATCAACAAGAAGTTCCCCAACATCGACTTCAGGGGAAATAGTCAGTATCTGGTAGGCATCCAGAAACACAAGTCTGAGGTGATGGTGGCCATGTCCAGCTACTACGACTCCTTCATAGACGTTATGGAGTTCAGGGATCATGTTTATGAACTGCTGAATACAATTGATGCCTGCCAGTGCTTCTTCAACATTgCGGTGAACTTTGACTTCACCAAGAACTACCTGGAGCTGATCATCACATATATATCTGTCATCATCATGCTTTCACGCGTCGAAGACAAGAAGGTCCTGGTGGGCATGTACAACTGTGCTCACGAGATGTCCAATGGCAGCAGTGACCCCGCGTACCCGCGCCTGGCTCAGATGTTTATGGAGTATGAACAGCCCATTAAGAAATTGACTGAGGAATTCGGCCCTCACACTAAGgGTGTGACGGAGGCCCTCCTGTCCCTACAGATGTTGTACCCCAGGAGGAACCTTCCTGCAGAACAGTGGCGCAGTGCTCAGCTCCTCAGTCTCCTCAGCGCACCTGCCTCCATGCTGGACCCTGCCTGCTGCGACACCATGGCCTGTGAGTACTTGTCCTTAGAGGTGATGGAGCGATGGATCCTTCtgggTTACCTGCTGTGTCATAGCAGTCTgaacaccaaccagtcatctcaGGAGCTGTGGAAGATGGCCCTCCGCAGCGGCCTCTATCTCACCATCATCAGGGATGAGACGATCAACATCCATAAGATCACAGAGGACTACTTCGACGGCCTGAAAGGGTACAGTAAGCGTATCGCCGATATCAAAGAATGTCGCGAGCATGTTACAGTCAACAGTGGAGCcatgcacagagagaggagaggtttcCTGAGGAATGCCTTGAAGGAGCTGGTCAAAGTCCTGGAGGATGAACCTGGACTTCTGGGACCCAAGGTGTTGTTTGTCTTCATGGCTCTGTCGTTTTCCCGTGACGAGGTCCTGTGGCTCGTCAGATATTCAGAGAATATTCCCAAGACCAAGACTCCAGAGGACTACGTAGACTCgCAGATGGCGGAACTCCTGTTCTACATGGAGAGGTTGAGGACCCTGATGACTAAGTACAGCCGTGTGGTGCAACGCTACCATGTCCAGTACCTGGCCCAGTTTGATGCCCTGCTCCTCAACGACACCATGCAGAATATGTATGTCTGTCCAGAAGAGGAATCAGTCCTGATGACATCATTTGTCTCAACCCTGTCTGCACTGACTATCAAGCAAGTGGAAAACGGAGAGGAGTTTGACTTCAGGGCTCTGAGACTGGACTGGTTAAGATTACAGGCCTACACCAGTGTGTCCAAGGCCCCACTCTCCCTCAAGGAATACCCAGACCTGGCTAAAGTGATGAACATGACCCAATTCCACACCAAGATGTTGGACAACGTGCAGGAGATGCTTCACGAAACCTCAGATCTCTCCATTCTCTGCTTCTACCCGCGGGTGTTTGAGAAGATGTTCTCTCAGAGCAGCGAGGAGGTTTCTATGCAGCGCTACCTCATGTCTTTCCCTCTGGTCTGCTCCCACTTCAACCAGACTGTCCATCCGCTCTGTCCAGAAGAGACGGAGGCTGTTGAGAAGAGGAGTCTGCGTCTGTGTGTGACCTTCCTGGAGGAGATTGCCAAACAGACCAGCTCCGTCATCTTAGAGATCTGTAGCGAACAGTGCAACCTCaatgaccagCTGTTGCCCAAACACTGTGGCCAGACCATAAGTGCAGCTCGCAACAAGAAGCAGAAGAAACAGACGCCGAAAAAAGGAGAAGTGCAGAGAGAGAAACCTGGAACGGAGAGTCAGAGGAAGGACCGTGCCATCGTCACCAAtATGGACAAGCTGCATCTGACTCTGACTGAGCTGTGCTCCTCATTCAGTGGGAGCAGTGACTTCACAGTGTTCAACCACATCGTCACTCCTGCAGAGTTCCTCATATCTCACTTGGAGACACGCCTCACCAAGATCATCGTGAGAATGGCCCATTACAACCAGACCACCCAGGAAATAGGACGTCCGTCTGACCTTCTGGCCGGGATTCGGGCCTACACAGCCAGCCTACACACCCTGTCACGCTACCTCAGTCTGGACGTCACTAGGCTGGTCAAGAATGTCCTACTGCAGCAGACGCAGCCACTGGACTCATACGGAGGACAGACCATCACCACGCTGTATACCAACTGGTACCTAGAGGGCCTTCTGCGTCAGGCCAGCAGCAACCTGATCGTTCACTGCCCTGCAATGCACTGCTTCGTCAACCAGACCATCGAGAACGAGCAGAGTTTCAGAGCAGAGGAGTACTCTGATATCTCAGAGATGCAGGCCCTGGCTGAGCTGATTGGTCCGTACGGTCTCAAGTTCCTCAGTGAGAACCTGATGTGGCACATCACCTCACAAGTCGGAGAACTCAAGaaaCTGGTGATAGAAAACATGGACGTGCTAGTTCAGATGAGAGCTAACTTTGACAAACCTGAGGCCATGGCTAACCTCCAGAAGAGACtgcctgCGGGAGAGAACGTCCTGAAGAGGATGACCATCATCGGAGTGATCCTGTCCTTTAGAGCCATGGCTCAGGACACACTGGAAGACATCATGCAGAAGCATTGCCCCTACCTGATGGGGCCCATTGAGAGCCTAAGGGACATGGTCTCCCCTGACACAGACATCAAGGTAACCCTGACGGTGTTTGAGCTGGCGTCTGCAGCAGGACTGACTTGTGACATCGACCCTGCTTTGGTGGCAGCCGTCGCTAGTATGCGTACAGATAACTCATCTGTTGATGAGGAGTACAAGCTAACCTGCCTTCTCCTGGTTTACATCGCCGTGTCTCTGCCCATCCTGGCTTTGGATCCCAACTCCTACTACAGCAGACATTATGGTGGGCACCACAACAACATCCACTGTCTGGCCACGGCCGTCAACCAGCTGTCCGCAGCCATGTTCACCGTCGAGAGCAAGAACATAGAGCAGCACCTTAAGGAGTTCCTTCTGGTTGCGTCTTCCACCCTGCTCCAGCTGGGTCAGAATGTAGAGAACAGGGTGGACGGCAAGAACAGAGACTCCATCTACCTTCTCCTGCACATGatCGTGGAGGCGTCGCCGTTCCTGAGCCAGGACATGTTGGAGAGCTGTTTCCCTTATGTCCTGCTGAGGAACGCCTACAGAGAGGTCTACAAGAACTATATCATTACACtgggctaacacacacacacacacacacacgcactgctgAGGAACGTCTACAGAGAGGTGTACAAGGCCTTCATCAATTCCCTGGGCCGGCTGCACTGAGTATCCAATATAACCTCTTCTAGGTTGGGATTCAAGCCGCTCGCTTTTGTAGACAGTGTGGCTTTCAAAGGCAATGTTAACCGTGTTCGTCAGGCCTGCTATATAGCACAGTTTCAGATTGAATCCAGGCTCAAGTCTCTGATGTCGCCAAACACTGCCTTCTGCTCTGTAGGGTCTAGGTCGTGTTACTGTAAAAGCTCTGTGGGGTCAACGTTGGATTACTGtaaaaagcactttgtgacaactgatgAAGTAAAATGGgatttataaataataataataataataataatgattgattgatttgttaCTATGCACAGCTAACACAATATATGTGGCTTTGTAAACTTTCAGAAATAATATAACCTTTTATTTAGCCATTATTAAAGGGTTTATTAAA

Function

GO: NA

KEGG:

id description
K05750 NCKAP1, NAP125; NCK-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1716268 lncRNA upstream 56295 87075366 ~ 87077802 (+) True G1501093
TU1716274 lncRNA upstream 56416 87073778 ~ 87077681 (+) False G1501093
TU1716267 lncRNA upstream 56416 87075366 ~ 87077681 (+) False G1501093
TU1716276 lncRNA upstream 57051 87075216 ~ 87077046 (+) True G1501094
TU1716273 lncRNA upstream 59243 87072991 ~ 87074854 (+) False G1501093
TU1716336 lncRNA downstream 373 87172658 ~ 87172885 (+) True G1501149
TU1716338 lncRNA downstream 5785 87178070 ~ 87178308 (+) True G1501151
TU1716346 lncRNA downstream 9775 87182060 ~ 87190275 (+) True G1501156
TU1716356 lncRNA downstream 59050 87231335 ~ 87231622 (+) True G1501165
TU1716360 lncRNA downstream 64098 87236383 ~ 87236597 (+) True G1501169
XM_021570128.2 mRNA upstream 189271 86925395 ~ 86944826 (+) True LOC110494793
XM_036950892.1 mRNA upstream 224397 86883315 ~ 86909700 (+) True myg1
XM_036950885.1 mRNA upstream 336216 86781571 ~ 86797881 (+) False LOC110494796
XM_036950902.1 mRNA downstream 9166 87181451 ~ 87254075 (+) True LOC110494792
XM_021570120.2 mRNA downstream 243435 87415720 ~ 87431940 (+) False LOC110494789
XM_021570118.2 mRNA downstream 252146 87424431 ~ 87431940 (+) False LOC110494789
XM_021570119.2 mRNA downstream 252146 87424431 ~ 87431940 (+) False LOC110494789
XM_021570123.2 mRNA downstream 252146 87424431 ~ 87431940 (+) False LOC110494789
TU1715156 other upstream 607067 86520830 ~ 86527030 (+) True G1500170
TU1715231 other upstream 750552 86382298 ~ 86383545 (+) True G1500239
TU1715184 other upstream 865922 86267328 ~ 86268175 (+) True G1500198
TU1714823 other upstream 1422238 85625443 ~ 85711859 (+) False G1499923
TU1714136 other upstream 1840976 85291785 ~ 85293121 (+) True G1499374
TU1716434 other downstream 252225 87424510 ~ 87486890 (+) True LOC110494789
TU1716787 other downstream 917372 88089657 ~ 88104227 (+) False LOC110494816
TU1716783 other downstream 937919 88110204 ~ 88124874 (+) True LOC110494816
TU1717736 other downstream 1597585 88769870 ~ 88800640 (+) True G1502352
TU1717757 other downstream 1634693 88806978 ~ 88808969 (+) False G1502370

Expression Profile