RNA id: XM_021570123.2


Basic Information

Item Value
RNA id XM_021570123.2
length 792
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110494789
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 87415720 ~ 87486890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actCCAAAGAAGAAATAAAAACGGATCTGAAGTCAATATCGCGTTATTTTGGCCTAATTCAACGTTTCTACTTCGGAATGGAAAGCTGATCCTATATATTTGCCTACGAGAAACGCCATTGATCCGTCATTACGTGGTCTGGTGACAACAGCTGTACATCCTACCAGCTCTCATGTCCTTGCTAGATAAATGAAAATACATTACACAATTAAATTAAGGTAGTGAAAAATAAAGTTAAAGAGAAAAAAAATGCTTTCTCGTTTATTGAAGGAGCATCATGCAAAGCAAAACGAGAGAAAAGAACTGCAAGAGAGACGCAGACGAGAGGCAATTGCAGCTGCCACCTGTCTAACAGAAGCCTTGGTGGATCACCTTAATGTTGGGGTGGCCCAGGCGTACGTGAACCAGAGGAAGCTGGACCATGAGGTGAAGACGCTACAGGTGCAGGCCGGCCAGTTCTCCAAGCAGACCGCTCAGTGGATCGTTATGGTGGAAGGCTTTAACCAAGCCCTGAAGGAAATAGGTGATGTGGAGAACTGGGCTCGCAGCATTGAGGTGGACATGAGAACCATCGCCACAGCTCTGGAGTACGTACACAAGGcctgagtgccagtcagTTTCTGCTATCGTACCGACTCATTGTCACGCCAAACACATTTAACCGCAAATGGAGTTGACGAGAGCACAAAGGGATCTCGGGAGAAACCAGGCTATTCGTGTCAAATGCTCGTCTTTTAACTCTGTTTTTGATGTGACGTTTCTCTATTCTggaataaagacattttaaaGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1716416 lncRNA upstream 83973 87340152 ~ 87340458 (+) False G1501218
TU1716417 lncRNA upstream 83973 87340152 ~ 87340458 (+) True G1501218
TU1716362 lncRNA upstream 183070 87241130 ~ 87241361 (+) True G1501171
TU1716360 lncRNA upstream 187834 87236383 ~ 87236597 (+) True G1501169
TU1716356 lncRNA upstream 192809 87231335 ~ 87231622 (+) True G1501165
TU1716512 lncRNA downstream 69300 87501240 ~ 87502220 (+) True G1501298
TU1716519 lncRNA downstream 94200 87526140 ~ 87527748 (+) True G1501305
TU1716530 lncRNA downstream 110359 87542299 ~ 87543995 (+) False G1501316
TU1716531 lncRNA downstream 110359 87542299 ~ 87546185 (+) True G1501316
TU1716578 lncRNA downstream 194223 87626163 ~ 87626792 (+) True G1501362
XM_036950902.1 mRNA upstream 170356 87181451 ~ 87254075 (+) True LOC110494792
XM_036950897.1 mRNA upstream 252146 87134096 ~ 87172285 (+) False nckap1l
XM_036950899.1 mRNA upstream 252146 87134097 ~ 87172285 (+) True nckap1l
XM_036950901.1 mRNA upstream 253403 87134096 ~ 87171028 (+) False nckap1l
XM_036950900.1 mRNA upstream 254433 87134096 ~ 87169998 (+) False nckap1l
XM_036950911.1 mRNA downstream 1771 87433711 ~ 87441188 (+) False LOC110519410
XM_036950912.1 mRNA downstream 1771 87433711 ~ 87441188 (+) True LOC110519410
XM_036950909.1 mRNA downstream 9899 87441839 ~ 87480286 (+) False LOC110494787
XM_036950910.1 mRNA downstream 9899 87441839 ~ 87480286 (+) True LOC110494787
XM_036950914.1 mRNA downstream 76969 87508909 ~ 87515178 (+) True LOC110494786
TU1716335 other upstream 255424 87168539 ~ 87169007 (+) True G1501148
TU1715156 other upstream 897401 86520830 ~ 86527030 (+) True G1500170
TU1715231 other upstream 1040886 86382298 ~ 86383545 (+) True G1500239
TU1715184 other upstream 1156256 86267328 ~ 86268175 (+) True G1500198
TU1714823 other upstream 1712572 85625443 ~ 85711859 (+) False G1499923
TU1716787 other downstream 657717 88089657 ~ 88104227 (+) False LOC110494816
TU1716783 other downstream 678264 88110204 ~ 88124874 (+) True LOC110494816
TU1717736 other downstream 1337930 88769870 ~ 88800640 (+) True G1502352
TU1717757 other downstream 1375038 88806978 ~ 88808969 (+) False G1502370
TU1717758 other downstream 1375432 88807372 ~ 88808969 (+) True G1502370

Expression Profile