RNA id: XM_036950915.1


Basic Information

Item Value
RNA id XM_036950915.1
length 3316
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110493299
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 87556796 ~ 88016164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgcatcagagaccgagagagagagagagagagatgtgacagagagagagacggagaaagagagagagagatgcaccagAGTTATTTGGTGATGGTGATGTAAAACAAGGAAATGTAACCAAGCAAAAGAAACAACACATTGCGTTAGGGACAGAGAGGCCATTCATTGAGTCTGATGTGATTTGTTTTGGTTAGCTGATTGTTTATTTATAATTTTTCGTTGGATTACGGATACGGATAAATAGTTTCTGTGTTTCCTTtgcaatgtttacatatttttcatGACCGTTTTGTTTCTCCGGATTTAGACTGAGTTGGTTAAACGGCAGCTGTTCTGTGCTTCTGCAGCTAGAAGGATACGATACTCTAAATCATCTTGAAcaacttacctaacctaccccatGAATAGGGAGCGTTCTCTCTGCCTGTATTGTGACAGAAGACAGATTACCCTCACAGGCAACCTCCtataaccagagagagagagagagaatactcaGTGCATGAGGGAGAAGAGAGCGCACGCTCTGACGGGCTCTGACGGGCTCATAGGATCGCTCTCCCAACAAGAACTAATTGATAGACAGAAAACAGAGCCGTCTGAATTGGCGCTTTGACTCCACTCTGAATGCAGGACCGGGACTGATGCCAGCTGCGGTTGTCGGGTCGGTCTCGATCCGGCGCACTACCTGTATCTCCAAATATGTGTCAGTGCGATTCAGTAGCGAAAGCCAGCAGAACGCCAGACTCTCTCGCGGAAGCAGGGAAGCTGTTCTTGAAACATACTACCTTCCATGGACTGAGACATGTATTTCTGAGCGGCTCCTACCCCCGGAGACTCGCCTGGCTACTGGCTTTCCTCACAGCTGTCGCTCTCCTATTCACCTGGTCCTCAAACCGAGTCCGGTACCTCCTCTCTTCGCCCGTGCACACCAAGGCGCATATGGTGTACGCCAAACGTCTCGTTTTCCCCGCGGTGACCATCTGCAACCAGAACCTCCTCATACCGCGTCGCATGAAGAAACCGGACATATTCAGCGCGGGAAGATGGTTAGGACTTCTAGGGAGGAACTGGCAAGTGTCCCCCGGTGCCAGGGACGTGCTCACAGACcgtgacagcagcagcagcaacgaACCGCCGTGGTCACCGCTCTCTCGGATCCTGGACTTCAACCACTTTCTGCCTCCTCCCCTGGAGTCTCAGCCGTCCATGCTGCAGCTCCTGGACCGCCTCGGTCACCAGATGGAGGAGATGCTGCTTTACTGCCGCTTCCAGGGAGAGGTGTGCGGGCCACGCAACTTCAGCACCATCTTCACCCGTTATGGGAAATGCTACACGTTCAACTCTGGCCAAGATAACCGCCCGCTGCTGGTGACCATGAAGGGAGGGATGGGTAACGGCCTAGAGCTGATGTTGGATATACAACAGGATGAATACCTGCCAGTCTGGGGAGAAACAGatGAGACTTCGTTCGAGGCGGGCATCAAGGTTCAGATCCACACACAGGACGAGCCTCCCTTCATTGACCAACTGGGTTTCGGTGTGGCCCCGGGCTTCCAGACCTTCGTATCCTGTCAGGAACAACGGCTGACATACCTGCCTCCTCCGTGGGGCGACTGCAAGTCTACTCCCATGGACTCTGACTTCTTCAACGCCTACAGCCTCACGGCCTGCCGTATCGACTGTGAGACGCGCTACCTGGTGGAGAACTGTAATTGCCGCATGGTGCACATGCCTGGAGATGCCCCTTACTGTACCCCAGAGCAGTACAAGGAGTGTGCCGACCCTGCCTTGGACTTCCTGGTGGAGAGGGATAATgactactgtgtgtgtgagacgccCTGCAACATGACGCGCTTTGGAAAGGAGATGTCCTTCGTCAAGATTCCCAGTAAGGCCTCAGCCAAGTACCTGGCCAAGAAGTACAACAAGACAGAGCAATACATTGCTGATAACATCCTGGTTCTGGATATCTTCTTTGAGGCTCTGAACTACGAGACCATCGAGCAGACGAAAGCTTACGAGTTCGCAGGGTTGCTGGGTGATATCGGTGGTCAGATGGGTCTCTTCATAGGAGCCAGTATCCTCACCATCCTGGAGCTCTTTGACTACCTATATGAGgtgATCAAGTACAAGCTGTGTCGATGCTCAagtaagaaacacaaacacagcaaCAACAATAACCGGGGAGCAGTGCTGAGTCTGGACGACGTCAAACGCCATGCGCCCTGTGAGAACCTGCATACACCGGGTACGTATCCTGCCAACATGCTACCTCACCATCCAGCGCAGGGCAACGTTGAAGACTTCACGTGCTGAGTCAAGTACCTGAGCCAATCAGGgcaggaggaagaaggagaaagAACCTGGCAGTATGCAACCAAAGTCAACTATACAACAATAATATCTGACGTGAACACTCTATATAAGGGATTGAAATGAAAAACTGATTGTCAATATGGAAACGTTTCTTACTATCTGAGAGGAGGGGGAAaatatcaacaatgacaagaagtaGAGAAGATAAAGACTATTCCAAACATAaatatctgtaaaagtttgttctGGAACATTTTGGGGAATTTGGAATCCTAGAAGTAAATCCTGAATGTTCTATGTCTATGTTTGGAATAGAACCAGGAAGCAAAGACTCTACTCTTCAAGAACACACTGCAAATATGGTCCTCTCACTCTAAAACAGACAGATATGGGAAATGTAACTAACTActgtacagacacaacactgtaCAGACAACATCAACAGAGCCCCCATGCCTTTACTGTATACGGTATCAGCAACACTCAGCTGTCACTGAGTATCCTATTAGGACAGTAGTATGGTCgggatcaattccatttaaatgtaGCCTGTTAACTTCCTGAATTGACCGAATCGAAATGccattgaccccaaccctggtcagTAGAGAAATGTAACGCGTCACTGAACTCCAGTGTAAATGCTGCTCCTCAGATCCAGTGTTGCTGCATCTCATCTTGAATGTAGCTCTGTCTACAACGGGTTAAATCAACTACAAGCGAGATGAGTGGTGAAAAAACATTCAGAGGGAGAGAACGGTAGAGAGATCTACCGTTTAGAGGAGAAGAAAACAAACGTGTGGTCAACTTTTCAGGTTCTATCTTTTGAAGCGCATGGCTTGTATATCGTCCTCTGCATGTGGGACATTTtgtatttagtttagtttatttattttataattaTTGCCAAGTTTGCCTCAATGATACAAGTAAAGGAATATGATGCTCCCCTCATAttcattaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1716704 lncRNA upstream 6658 87872599 ~ 87872856 (+) True G1501474
TU1716702 lncRNA upstream 9558 87869751 ~ 87869956 (+) True G1501472
TU1716693 lncRNA upstream 20329 87858793 ~ 87859185 (+) True G1501464
TU1716680 lncRNA upstream 46340 87832830 ~ 87833174 (+) True G1501451
TU1716676 lncRNA upstream 56600 87822700 ~ 87822914 (+) True G1501447
TU1716743 lncRNA downstream 10883 88027047 ~ 88027297 (+) True G1501513
TU1716746 lncRNA downstream 11432 88027596 ~ 88031324 (+) True LOC118940111
TU1716759 lncRNA downstream 38045 88054209 ~ 88054640 (+) True G1501527
TU1716750 lncRNA downstream 53447 88069611 ~ 88073935 (+) True LOC110493298
TU1716768 lncRNA downstream 67326 88083490 ~ 88083701 (+) True G1501536
XM_036950914.1 mRNA upstream 364336 87508909 ~ 87515178 (+) True LOC110494786
XM_036950909.1 mRNA upstream 399228 87441839 ~ 87480286 (+) False LOC110494787
XM_036950910.1 mRNA upstream 399228 87441839 ~ 87480286 (+) True LOC110494787
XM_036950911.1 mRNA upstream 438326 87433711 ~ 87441188 (+) False LOC110519410
XR_005036713.1 mRNA downstream 11432 88027596 ~ 88029802 (+) False LOC118940111
XM_036950919.1 mRNA downstream 19200 88035364 ~ 88073938 (+) False LOC110493298
XM_021570149.2 mRNA downstream 58231 88074395 ~ 88079956 (+) True LOC110494817
XM_036950921.1 mRNA downstream 73470 88089634 ~ 88143474 (+) False LOC110494816
XM_036950924.1 mRNA downstream 167564 88183728 ~ 88186192 (+) True LOC110494814
TU1716434 other upstream 392624 87424510 ~ 87486890 (+) True LOC110494789
TU1716335 other upstream 710507 87168539 ~ 87169007 (+) True G1501148
TU1715156 other upstream 1352484 86520830 ~ 86527030 (+) True G1500170
TU1715231 other upstream 1495969 86382298 ~ 86383545 (+) True G1500239
TU1715184 other upstream 1611339 86267328 ~ 86268175 (+) True G1500198
TU1716787 other downstream 73493 88089657 ~ 88104227 (+) False LOC110494816
TU1716783 other downstream 94040 88110204 ~ 88124874 (+) True LOC110494816
TU1717736 other downstream 753706 88769870 ~ 88800640 (+) True G1502352
TU1717757 other downstream 790814 88806978 ~ 88808969 (+) False G1502370
TU1717758 other downstream 791208 88807372 ~ 88808969 (+) True G1502370

Expression Profile