RNA id: XM_036950943.1


Basic Information

Item Value
RNA id XM_036950943.1
length 2643
RNA type mRNA
GC content 0.50
exon number 14
gene id pcbp4
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 89575961 ~ 89725809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacagagaggacaggaggtggagaggaaaggagagaggaggggtggacagaagaggagATagctgtgaggagagagagaacccacCTTCACCctgagagtctgtctgtctgtctgtctgtagagcaTCTTCCATGCGTCTACCTGTGTCTCATTCCCACATCAACATGAACTGTGAGCAGGACTTTGAAGAGGGGGGCATGAACGTCACCCTCACGCTACGGCTCCTCATGCACGGAAAGGAAGTCGGCAGCATCATTGGAAAGaaaggagagacagtgaAGAGAATACGAGAAGAGAGCAGCGCCCGTGTCAACATTTCAGAGGGTTCGTGTCCAGAGAGGATCATCACCATTACAGGACCTACAGACTGTGTCTTCAGGGCCTTCACGATGATCACTCTCAAACTGGAAGAGGACCTTTCAACTCTGGTAGCCAATGGCACGGTCACCAGCAAGCCTCCCGTCACCCTACGATTGGTCATTCCTGCCAGCCAATGTGGCTCTCTCATCGGGAAGGGCGGCTCCAAGATCAAGGAGATCAGAGAGACCACCGGGGCACAAGTACAAGTAGCTGGTGACCTTCTGCCCAACTCCACCGAGAGAGGAGTGACGATATCTGGAACCCAAGACGCCGTCATCCAGTGTGTTAAACTCATCTGCACTGTCATTCTCGAGTCACCTCCGAAAGGAGCCACTATTCCGTATCGACCCGGCCCCTCCCCAGGAACAGTCATGATCGCCGGGAACcagGTGTTTGAGACATCTGAGTACGGATCACATCCTCTCTTCCATGTGTCCCAGGGagggctggatttacaacaaATGTACGCTGTGCAGAACCAATATGGCATTCCACATTCAGAGTTGGCCAAGCTTCACCAGTTGTCGATGCAACAGCAAGGCCTGGCCGCCCAGATGAGCCAGCAGCAAGGCCTGGCCGCCCAGATGAGCCAGCAGCAAGCCAACTCTGTCATGCCTGCAGGAATGGAGTCCAATTCCCAGACCACATCTCAGGAACTGCTCATTCCTAATGACctcATCGGCTCCATCATCGGGCGTCAGGGAACCAAGATCAATGAGATCCGCCAGGCGTCAGGGGCTCAGATTAAGATAGGTAGCCAGCTGGACAGCACCAGCGATAGAGCCGTCACCATCACAGGGACCCCCATCTCTATCAACCTGGCCCAATACCTTATCACCTCCTGTTTAGAGACCGCCAAATCCACCGCCCAGTCTTCCTCCATGTCGACCTCTGCTGACCTCACCATGGCCTACACCCAACCCCCCTCCCCCGCCTCCTCCTCAGCCGCTGCTGCTGCCACCCTGGCTGCCATGGGCTGCCCCGGCAtgtcccacccccacccccacgcTGCAGTCCCCATGATGGGCAACCCCTACGGGGCCCTCCCCCTCTCCAGCCTCCTCGGAATGCAATCCATGAAATCCCTCCAATCCATGCCCTACCTGGCTTTATCCAACCCTGCCGCCAATGCAGCCGCCGCCCAGGCCCAGGCCCAGGCTCAGGcccaggctcaggctcaggctcaggcccAGATCTATACGGCGAAGATTTCTTCCGCCAATGGGATCGGGAAGAAACCAGAGAGACAGAAGTTTGCGCCGTACTGATGAcgtctgtctccatccctccagaTCTCACCTCCTCCGTCTACGAGACAAGAAAGAAAAGGGGGAAAGAATGGAGGGAAGGAAATAGCAGGGTTTTtgttctcctccattctctttcttCTTGCCTGATGATGTGATTGTAGATGGACATTTTCGATTGATTATGTTTTGtaggctttttttttttgtcccttatatagtgaaccactaggaggaacGTTTGATTGGCTCGTTTAGATAGCTATATTTATGTTGTCAGGTCTTGGAAACCTATCAAGCCATAGCCcgtgtcccaaatgacaacctaattcctgcactactttagtccagagcaCATAAGGTTCAGGTtgaaagtagtgcgctatataggaaaatagggtggcatttgggatgcacacatagACTATTCCTAACTTCCATTTTTATCTTCTTCTAACCTTCCATTCGTTCTACTGTACTGCTGTGATTGATTATTGATAATGATGAAATATTCCCACTAAGAGTTTATAAATTAAAACACTGGTGAGTGATGCTCAACTGTACGTGCGTATGAGCTTTTTTATACAGTACATGATGTCTGTTTAGGTTACTTCCTGTATTCAACTCCTTGATTTTTTGAAGgacgatgtaaaaaaaaaataataataataataattaaaagtttaaaaaaatgactacacaaaaaaaaaatctaaccacTCGTTTGCATTAATTTATTTTGTGAGTTTTTGGTAATATTTTATTTGAAATGTgttgtttaatttattttatttaagtaTTACTTTTAcgataattttttttaaatttttgagGTAGGAAATGGCAGCGAGTACTACTGCTAAGATTATGAGTTATTCCATCCTGTCCTGAGTTTTAACTCGGTGACCAGACTGCTGGCGAGGGCCACTCTAACACAGTGACCAGACTGCTGGCGAGGGCCACTCTAACACGGTGACCAGACTGCTGGCGAGGGCCACTCTAACACGGTGACCAGACTGCTGGCTAGGGCCAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1719205 lncRNA downstream 47281 89527611 ~ 89530291 (-) True G1503562
TU1719203 lncRNA downstream 53255 89522095 ~ 89524317 (-) True G1503561
TU1719195 lncRNA downstream 66666 89510177 ~ 89510906 (-) True G1503555
TU1719172 lncRNA downstream 111224 89465340 ~ 89466348 (-) True G1503538
TU1719158 lncRNA downstream 132829 89444204 ~ 89444743 (-) False G1503525
TU1719286 lncRNA upstream 22531 89681100 ~ 89685042 (-) False G1503620
TU1719287 lncRNA upstream 22531 89681100 ~ 89684144 (-) False G1503620
TU1719288 lncRNA upstream 22698 89681267 ~ 89683622 (-) False G1503621
TU1719289 lncRNA upstream 24525 89683094 ~ 89683622 (-) True G1503621
TU1719285 lncRNA upstream 25400 89683969 ~ 89685042 (-) True G1503620
XM_036950929.1 mRNA downstream 669897 88901858 ~ 88907675 (-) True LOC118940510
XM_036950931.1 mRNA downstream 669960 88901858 ~ 88907612 (-) False LOC118940510
LOC110493292 mRNA downstream 700120 88872920 ~ 88877452 (-) False LOC110493292
XM_036948442.1 mRNA downstream 977201 88437246 ~ 88600371 (-) True LOC110494809
XM_021570146.2 mRNA downstream 1332067 88233684 ~ 88245505 (-) True zgc:171566
XM_036948444.1 mRNA upstream 141105 89799674 ~ 89801444 (-) True LOC118940164
XR_005037107.1 mRNA upstream 844707 90503276 ~ 90504931 (-) True LOC110494821
XM_036950952.1 mRNA upstream 846502 90505071 ~ 90866294 (-) True LOC110493301
XM_021570156.2 mRNA upstream 1751879 91410448 ~ 91412087 (-) True LOC110494831
XM_036950954.1 mRNA upstream 2006878 91665447 ~ 91696631 (-) True LOC110494829
TU1718207 other downstream 703046 88872775 ~ 88874526 (-) True LOC110493292
TU1718044 other downstream 1024741 88550366 ~ 88552831 (-) True G1502566
TU1717937 other downstream 1152067 88358152 ~ 88425505 (-) False G1502489
TU1717938 other downstream 1152067 88418999 ~ 88425505 (-) False G1502489
TU1717412 other downstream 1413030 88162278 ~ 88164542 (-) True dnsl3
TU1719292 other upstream 27846 89686415 ~ 89686877 (-) True G1503624
TU1721876 other upstream 2456724 92115293 ~ 92170717 (-) True G1505789
TU1722385 other upstream 2679484 92338053 ~ 92339443 (-) True G1506160
TU1722507 other upstream 2837443 92496012 ~ 92498948 (-) True G1506231
TU1722835 other upstream 3170341 92828910 ~ 92836424 (-) False LOC110494834

Expression Profile