RNA id: TCONS_00046531


Basic Information

Item Value
RNA id TCONS_00046531
length 1024
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_023527
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 28252520 ~ 28381437 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agcAGCAGAGCATCTCATTCCCTTCATCTCTGCTGATCCGCGCATGCAAGTTTGTTTTTACACCGAGGGCGCACGTGTTTGTTTTTCTGAAACCGAAGGAAAAGCCGTAGGAATCGAGAAATATACTATTAACTTAAGTAGCCGATTATATTTCTGTTGCTCTCATATGCTGGAGCGATGGCTTTTATTCTGGTTTCCAGCGTTAAATAAGCCTTTGCCAAAGAACAAAACCATTATTTTGGGAAATGGGCAGCACTGCAATGGATTCTAAGAAAAAAGATGAGAAGAAAAATACAAGAAAGAGGATATCGCTTCGGATAAACATGCCTGACTTGAGCTCCTTCGCCATGCCGTTCCTGGAAGGAGATGCAGAACATGCCTGTAAGGACGGCGCACGCAAGGGGGATCTTGGCTGTCGTTCAGCCAGCCCGACCAAAACCTTCTTCAGCAGGGGTCCATTTAGTCGCCCCTCCAGCCCCATGTCTGCTCCAGCCCGGACCAGAACCAGCCCAGGATCTCCCAAACCCATCTTCTCCAACCACGAGTCCTCCCCCAAGTGTTCACGGCGCCGCAGCTTCACCGGGATCTTCCGCTCATCCTCCAAAGACTCCACCAATCCCTCCACATCACCAGTCAGCATCAAACTCTTCTCCAGGACCAGGAAAGCATCTGGCATCTCCTCATCACCCACCACTCCAACACAACTGACCAAGCAGACTTCAGCGTTTCTTGTGGAAGTCAGTCGAAATGACACAGTGCACCGCTCCTCGTCCTCGCCTCTCGACACGGGACAGCCCCACAGTCCACCCACTGCAAAACCACCACCATGTCCCTCCTCAGCACCCATATCTACCTCACGCACAGTTCACGGTTTATCTGAAGATATGCTGGAGAAACTCGATATCGAGGATGAAGCTGTTGAACATTCTGAGAGCGACATTTACATGCGGTTTATGAAGTCACATAAGTGCTATGACATCGTCCCTACCAGCTCCAAACTTGTGGTCTTTGACACAACGCTGCA

Function

GO:

id name namespace
GO:0042149 cellular response to glucose starvation biological_process
GO:0071900 regulation of protein serine/threonine kinase activity biological_process
GO:0006468 protein phosphorylation biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0031588 nucleotide-activated protein kinase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019887 protein kinase regulator activity molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0016208 AMP binding molecular_function
GO:0004679 AMP-activated protein kinase activity molecular_function
GO:0032559 adenyl ribonucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-160 Predicted to enable AMP binding activity; protein kinase binding activity; and protein kinase regulator activity. Predicted to be involved in cellular response to glucose starvation; protein phosphorylation; and regulation of catalytic activity. Predicted to act upstream of or within regulation of protein serine/threonine kinase activity. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Wolff-Parkinson-White syndrome; glycogen storage disease; hypertrophic cardiomyopathy 6; and lethal congenital glycogen storage disease of heart. Orthologous to human PRKAG2 (protein kinase AMP-activated non-catalytic subunit gamma 2).

Ensembl:

ensembl_id ENSDART00000148406

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047214 lncRNA downstream 177940 28081388 ~ 28115364 (-) False XLOC_023524
TCONS_00046872 lncRNA downstream 177986 28102898 ~ 28115318 (-) True XLOC_023524
TCONS_00046871 lncRNA downstream 342100 27908955 ~ 27951204 (-) True XLOC_023523
TCONS_00047213 lncRNA downstream 516490 27756876 ~ 27776814 (-) True XLOC_023521
TCONS_00047212 lncRNA downstream 802107 27489815 ~ 27491197 (-) True XLOC_023520
TCONS_00047215 lncRNA upstream 171163 28552567 ~ 28559229 (-) False XLOC_023530
TCONS_00046535 lncRNA upstream 171163 28552567 ~ 28561226 (-) False XLOC_023530
TCONS_00047216 lncRNA upstream 172149 28553553 ~ 28559229 (-) True XLOC_023530
TCONS_00046541 lncRNA upstream 590680 28972084 ~ 28974899 (-) True XLOC_023534
TCONS_00046550 lncRNA upstream 647837 29029241 ~ 29029657 (-) True XLOC_023535
TCONS_00046529 mRNA downstream 34177 28253245 ~ 28259127 (-) False XLOC_023527
TCONS_00046526 mRNA downstream 47432 28231602 ~ 28245872 (-) True XLOC_023526
TCONS_00046525 mRNA downstream 50118 28231602 ~ 28243186 (-) False XLOC_023526
TCONS_00046524 mRNA downstream 63686 28137210 ~ 28229618 (-) True XLOC_023525
TCONS_00046523 mRNA downstream 414122 27783946 ~ 27879182 (-) True XLOC_023522
TCONS_00046533 mRNA upstream 29559 28410963 ~ 28419444 (-) True XLOC_023528
TCONS_00046534 mRNA upstream 44496 28425900 ~ 28437833 (-) True XLOC_023529
TCONS_00046536 mRNA upstream 263014 28644418 ~ 28649360 (-) False XLOC_023531
TCONS_00046537 mRNA upstream 265447 28646851 ~ 28648949 (-) True XLOC_023531
TCONS_00046538 mRNA upstream 304883 28686287 ~ 28711176 (-) True XLOC_023532
TCONS_00046496 other downstream 1758650 26508888 ~ 26534654 (-) False XLOC_023502
TCONS_00046487 other downstream 1813463 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046480 other downstream 1924433 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046479 other downstream 1930833 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046441 other downstream 3269281 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046542 other upstream 646024 29027428 ~ 29028548 (-) False XLOC_023535
TCONS_00046544 other upstream 646044 29027448 ~ 29030632 (-) False XLOC_023535
TCONS_00046545 other upstream 646998 29028402 ~ 29029657 (-) False XLOC_023535
TCONS_00046546 other upstream 647003 29028407 ~ 29030633 (-) False XLOC_023535
TCONS_00046551 other upstream 653220 29034624 ~ 29034740 (-) True XLOC_023536

Expression Profile

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