RNA id: TCONS_00046537


Basic Information

Item Value
RNA id TCONS_00046537
length 531
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_023531
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 28644418 ~ 28649360 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTCACTCGTTCCACTATATCAAGAGGCTATTTGAAACAATATTTGTACATCGGTTTTCTCATGGCACAATGCCTCTCAGAGCCATTGTAAAAAATTGTGTTTATTACTGGGGTTTTGCAGCTTGGTTAGCATACTACATCAACCATCCCCTCTACACACCTCCATCATATGGAGAGATACAGGTCAATTATGCGCTCATTATCTTTGTGTTGTGTGAGGCAGGTAATTTCTCCATCCACTGGTCATTGAACAGTTTAAAATGTGAAGGTTCAAAATGTCGGAGGTTCCCACATCCATCCAAAAACCCTTTCACGTGGCTCTTTTTCTTTGTATCATGCCCCAACTACACATATGAGgtGGGTGCTTGGGTGGGACTGTCCATTATGACCCAGTGTGTTCCAGTTGCTCTCTTCACATTTGTTGGATTCATTCAAATGACTATCTGGGCTAAAGGAAAACATCAAATTTACGTCAGAGAGTTTAAGAACTATCCAAACCTCCGCATGCCTATCCTGCCATTTATTCTCTGA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0042761 very long-chain fatty acid biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-138 Predicted to enable oxidoreductase activity. Predicted to be involved in very long-chain fatty acid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000180227

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046535 lncRNA downstream 85625 28552567 ~ 28561226 (-) False XLOC_023530
TCONS_00047215 lncRNA downstream 87622 28552567 ~ 28559229 (-) False XLOC_023530
TCONS_00047216 lncRNA downstream 87622 28553553 ~ 28559229 (-) True XLOC_023530
TCONS_00046532 lncRNA downstream 265414 28364632 ~ 28381437 (-) True XLOC_023527
TCONS_00047214 lncRNA downstream 531487 28081388 ~ 28115364 (-) False XLOC_023524
TCONS_00046541 lncRNA upstream 323135 28972084 ~ 28974899 (-) True XLOC_023534
TCONS_00046550 lncRNA upstream 380292 29029241 ~ 29029657 (-) True XLOC_023535
TCONS_00047217 lncRNA upstream 1272127 29921076 ~ 29922820 (-) True XLOC_023545
TCONS_00046570 lncRNA upstream 1680518 30329467 ~ 30376218 (-) True XLOC_023550
TCONS_00046573 lncRNA upstream 2188498 30837447 ~ 30840319 (-) True XLOC_023551
TCONS_00046534 mRNA downstream 209018 28425900 ~ 28437833 (-) True XLOC_023529
TCONS_00046533 mRNA downstream 227407 28410963 ~ 28419444 (-) True XLOC_023528
TCONS_00046531 mRNA downstream 265447 28293304 ~ 28381404 (-) False XLOC_023527
TCONS_00046530 mRNA downstream 313822 28268300 ~ 28333029 (-) False XLOC_023527
TCONS_00046529 mRNA downstream 387724 28253245 ~ 28259127 (-) False XLOC_023527
TCONS_00046538 mRNA upstream 37338 28686287 ~ 28711176 (-) True XLOC_023532
TCONS_00046539 mRNA upstream 115072 28764021 ~ 28893303 (-) False XLOC_023533
TCONS_00046540 mRNA upstream 115883 28764832 ~ 28893251 (-) True XLOC_023533
TCONS_00046543 mRNA upstream 378487 29027436 ~ 29030690 (-) False XLOC_023535
TCONS_00046547 mRNA upstream 379464 29028413 ~ 29029659 (-) False XLOC_023535
TCONS_00046496 other downstream 2112197 26508888 ~ 26534654 (-) False XLOC_023502
TCONS_00046487 other downstream 2167010 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046480 other downstream 2277980 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046479 other downstream 2284380 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046441 other downstream 3622828 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046542 other upstream 378479 29027428 ~ 29028548 (-) False XLOC_023535
TCONS_00046544 other upstream 378499 29027448 ~ 29030632 (-) False XLOC_023535
TCONS_00046545 other upstream 379453 29028402 ~ 29029657 (-) False XLOC_023535
TCONS_00046546 other upstream 379458 29028407 ~ 29030633 (-) False XLOC_023535
TCONS_00046551 other upstream 385675 29034624 ~ 29034740 (-) True XLOC_023536

Expression Profile

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