RNA id: TCONS_00046574


Basic Information

Item Value
RNA id TCONS_00046574
length 750
lncRNA type lincRNA
GC content 0.42
exon number 3
gene id XLOC_023554
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 31040020 ~ 31081433 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGTACACCTGTTTTTGTACAACTGATGTTTATTTTAGCGCCATCTACTGTCAGAGAGTGAAGTTACATTTTCAATTACCCCATTCAATGCTTTCTTGAAGTGTCAAGTGGAATGTGACACTAAAAACTGTATTCTGATGCtatacagcagtgtttctcatcTATGTTCCTGGAggcaccagctctgcacatttccctGTCTCCTTAAtctaacacacctgattcagatcattagctcattagcaaagactgaaagacatgtaatgggtgtgacagacaaaggtgACATCCATGTAGTATTTGGCGGCCCTCCAGGAAAGTTGGTTGGGAAACACAACTGTAAAGTACGTTATAATTAAAAGCGAAAGTGTTTCAAAGTTCTCTAAACGTCGTGCTTATAGATTGAACCACCTGAAtgagaatcagaaagagctttgccagGTGCAACAGTCCATCCAGTGAGGGCTTTTTTTGCTACACCTCGAGGACGATCAGAGGATCCTCGTGTCTGCGAGTAGGTGTGGGAAAGAAATCTTCACTCACGGCCCAGAATAACCTCGTCCTCTGGGGAAGAACTTTCCACCTCTCAGTCCTGTTCAGATGCCAGCCTGATTTGGGTTGCCAGTGCAGGTGGCCAGAGAAGTTTCACACATTTCCACAAAAAAAGTAAAGAGAATGACAAGAACTGACTCTGGACCTGTAAgttaagtttcattttattttatgaatgcatttttgtttttacatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194023

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046874 lncRNA downstream 82555 30927688 ~ 30972863 (-) True XLOC_023553
TCONS_00046873 lncRNA downstream 143553 30903443 ~ 30911865 (-) True XLOC_023552
TCONS_00046573 lncRNA downstream 215099 30837447 ~ 30840319 (-) True XLOC_023551
TCONS_00046570 lncRNA downstream 679200 30329467 ~ 30376218 (-) True XLOC_023550
TCONS_00047217 lncRNA downstream 1132598 29921076 ~ 29922820 (-) True XLOC_023545
TCONS_00046578 lncRNA upstream 17101 31098534 ~ 31100851 (-) False XLOC_023556
TCONS_00046876 lncRNA upstream 373653 31455086 ~ 31458194 (-) False XLOC_023563
TCONS_00047218 lncRNA upstream 375655 31457088 ~ 31457818 (-) False XLOC_023563
TCONS_00047219 lncRNA upstream 375655 31457088 ~ 31457834 (-) False XLOC_023563
TCONS_00047220 lncRNA upstream 375655 31457088 ~ 31457843 (-) True XLOC_023563
TCONS_00046571 mRNA downstream 193250 30835929 ~ 30862168 (-) False XLOC_023551
TCONS_00046572 mRNA downstream 212168 30836160 ~ 30843250 (-) False XLOC_023551
TCONS_00046568 mRNA downstream 779683 30227941 ~ 30275735 (-) False XLOC_023549
TCONS_00046567 mRNA downstream 780214 30225967 ~ 30275204 (-) False XLOC_023549
TCONS_00046569 mRNA downstream 792117 30228270 ~ 30263301 (-) True XLOC_023549
TCONS_00046575 mRNA upstream 71 31081504 ~ 31090948 (-) False XLOC_023555
TCONS_00046576 mRNA upstream 466 31081899 ~ 31092711 (-) False XLOC_023555
TCONS_00046579 mRNA upstream 17125 31098558 ~ 31140356 (-) False XLOC_023556
TCONS_00046580 mRNA upstream 35181 31116614 ~ 31123365 (-) True XLOC_023556
TCONS_00046581 mRNA upstream 88929 31170362 ~ 31194847 (-) True XLOC_023557
TCONS_00046564 other downstream 1058228 29964976 ~ 29997190 (-) True XLOC_023547
TCONS_00046553 other downstream 1581443 29473856 ~ 29473975 (-) True XLOC_023538
TCONS_00046552 other downstream 2002592 29052708 ~ 29052826 (-) True XLOC_023537
TCONS_00046551 other downstream 2020678 29034624 ~ 29034740 (-) True XLOC_023536
TCONS_00046546 other downstream 2024785 29028407 ~ 29030633 (-) False XLOC_023535
TCONS_00046577 other upstream 3256 31084689 ~ 31090948 (-) True XLOC_023555
TCONS_00046583 other upstream 137390 31218823 ~ 31223183 (-) True XLOC_023558
TCONS_00046586 other upstream 241922 31323355 ~ 31331913 (-) True XLOC_023560
TCONS_00046592 other upstream 558879 31640312 ~ 31640427 (-) True XLOC_023564
TCONS_00046593 other upstream 705030 31786463 ~ 31786577 (-) True XLOC_023567

Expression Profile

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