RNA id: TCONS_00046587


Basic Information

Item Value
RNA id TCONS_00046587
length 2157
RNA type mRNA
GC content 0.47
exon number 16
gene id XLOC_023561
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 31402894 ~ 31425799 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGCTCCAGGATCTGCACCAGCTCCTGCCCCAGCTCCTGCTCCAGGATCTGCACCAGCTCCTGCCCCAGCGTCTGCACCAGCTCCTGCTCCAGCGTCTGCACCAGCTCCTGCCCCAGCTGAAGATGGACCCCCTTCACCTCCAACTCCACCAGTCGTCTACTACAGATACACTGACGACCAACTGCGGGACATCGTCAAGAAAATGCGGGAGAGGACAGAGCTTTATAAAGATAAAATCGTCGACCCATACGCCTCGTCCCCAGAGCGCACACCACCCGTCACACCAGTTTACCGAAAGGAAGACTGGATCAGAAAACAAGAAGAGGAAAGAATAAAACGAGAAGAGGCTGAGCAGAAGAAAAAAGAGGATGACGCCAAGAGAGCTGCAGCGAAgaaggaaaaggaggagaaagaaaagaaggagaaagaggaaaaactgaaagcAGAGAAAGAGGCAGCTGATAAAGAGGCAGCTGAGGCCATGTTCCCTAAAATCAAATGCACATGTATAGACACCCTTCTCAAACCATTCGAAGACAAAATGGACTCGTATTTGGGTGCAACTATTGACCCTTTTACAGATCGGAGGTATATTAAATGGCTGAGCGTCGTCACAGTGGCGTTTAACTATAATGTTTGGTTGGCCACGGCACGCTTGTGTTTTCCCTACCACACTCCTGCCACCATTCCCTTCTGGATCCTATTCGATTTCCTGGCAGACCTGGTGAACGTCATCGACATCACTATGTTTCAGCCGCGGCTTCAGTTTGTGAAAGCAGGAGACATTATAAAAGACAGAGTACAGACAAAACAGAACTACAGAGAATCTGCCAGATTCCAGACAGACCTGATAAGCATCATACCGTTTGACTTGCTGTGTTTCCAGTTTGGATTTACCTCATTCTTTAGGCTAAACCGATTTATGCGGTATCAATCATTTTTTGAGTTCAGTGATCGTCTGGAAAGCATCATGGCTAAGGCGTATATCTGGAGAGTTGGCCGCACTACTGGATATCTGCTCTACTGTCTTCATATCAACTCCTGCCTCTATTATGTGGCATCAGAATATGAGGGTCTGGGCAGCAGTAGGTGGACATATGATGGACTAGGAAATGCATATCTGCGCTGTTATTACTTCGCCACTCGTACCCTGATCACTATCGGAGGTCTGCCGGAGCCCCATACGCTCTTCGAGATCGTCTTCCAGCTCGTCAACTTCTTTACTGGAGTCTTTGTCTTCTCCAGCCTGATTGGACAGATGCGAGACGTCATTGGAGCAGCTACGGCAGGTCAAACGTACTTCAGAGCATCTATGGATTCTTGCGTGGCGTATATGAACACCTACACCATTCCCAAACTGGTCCAGAGCAGAGTTCGCACCTGGTATAACTACACCTGGGACTCCCAGGGCATGCTGGATGAATCGGAGTTATTAGACAAGATGCCGCTGGTGATGAGAACAGCAATCGCTGTGGATATCAACCTCGCTACTTTCCAGAAGATTGACCTTTTCAAGgGTTGTGACAACCAGATGCTTGTGGACATGTTACTGCGTCTGAAATCCATTGTGTACCTACCTGGAGACTTTGTGTGCAAGAAGGGAGACATTGGGAGAGAAATGTACATCATCAAGGCTGGAGAAGTGCAGGTCATCGGTGGACCGGATAACAAGATTGTGTTTGTGACTCTGAAAGCAGGCTGTGTGTTCGGGGAGATCAGtctctTACAGTCGGCAAAAGATGGCGGAAACAGAAGAACTGCAAACGTTGCTGCTCATGGATTTGCCAACCTCTTCGTGCTGGATAAGAAAGATCTCAATGACATCCTGATCCATTACCCAGAGTCTCAAAAAGTCCTGGCCAAGAAAGGACGGAAACTGATGAAGGCCAAAGGCAAAGCTGCTCCTACAAAGGATGAAGGAGAGAAGAAGAAGGGATTGGCTTTGTTTGGACCCAAACCTCCCACTCCCAAAATGTTGCaatgttacgtttacacacacatccgcaaactacatgtaaatgcatcagcttttgcatcatactcactactcttgagtacttttgaaaggtcaaGGGTCAGGGTAAGggtttttactcatactttaaatagtaatatttacaacagatacttttactctactgcactacatttttag

Function

GO:

id name namespace
GO:0098655 cation transmembrane transport biological_process
GO:0007601 visual perception biological_process
GO:0005222 intracellular cAMP-activated cation channel activity molecular_function
GO:0005223 intracellular cGMP-activated cation channel activity molecular_function
GO:0030553 cGMP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090611-1 Predicted to enable cGMP binding activity; intracellular cAMP-activated cation channel activity; and intracellular cGMP-activated cation channel activity. Predicted to act upstream of or within cation transmembrane transport and visual perception. Human ortholog(s) of this gene implicated in achromatopsia 3 and color blindness. Orthologous to human CNGB3 (cyclic nucleotide gated channel subunit beta 3).

Ensembl:

ensembl_id ENSDART00000158567

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046578 lncRNA downstream 302043 31098534 ~ 31100851 (-) False XLOC_023556
TCONS_00046574 lncRNA downstream 321461 31055418 ~ 31081433 (-) True XLOC_023554
TCONS_00046875 lncRNA downstream 326365 31040020 ~ 31076529 (-) False XLOC_023554
TCONS_00046874 lncRNA downstream 430031 30927688 ~ 30972863 (-) True XLOC_023553
TCONS_00046873 lncRNA downstream 491029 30903443 ~ 30911865 (-) True XLOC_023552
TCONS_00046876 lncRNA upstream 32512 31455086 ~ 31458194 (-) False XLOC_023563
TCONS_00047218 lncRNA upstream 34514 31457088 ~ 31457818 (-) False XLOC_023563
TCONS_00047219 lncRNA upstream 34514 31457088 ~ 31457834 (-) False XLOC_023563
TCONS_00047220 lncRNA upstream 34514 31457088 ~ 31457843 (-) True XLOC_023563
TCONS_00047221 lncRNA upstream 286927 31709501 ~ 31717481 (-) True XLOC_023565
TCONS_00046585 mRNA downstream 70807 31310640 ~ 31332087 (-) False XLOC_023560
TCONS_00046584 mRNA downstream 96170 31294019 ~ 31306724 (-) True XLOC_023559
TCONS_00046582 mRNA downstream 179662 31201195 ~ 31223232 (-) False XLOC_023558
TCONS_00046581 mRNA downstream 208047 31170362 ~ 31194847 (-) True XLOC_023557
TCONS_00046579 mRNA downstream 262538 31098558 ~ 31140356 (-) False XLOC_023556
TCONS_00046589 mRNA upstream 8316 31430890 ~ 31452923 (-) False XLOC_023562
TCONS_00046590 mRNA upstream 8848 31431422 ~ 31439841 (-) False XLOC_023562
TCONS_00046591 mRNA upstream 8848 31431422 ~ 31452875 (-) True XLOC_023562
TCONS_00046594 mRNA upstream 409884 31832458 ~ 31846366 (-) False XLOC_023568
TCONS_00046595 mRNA upstream 411969 31834543 ~ 31843173 (-) True XLOC_023568
TCONS_00046586 other downstream 70981 31323355 ~ 31331913 (-) True XLOC_023560
TCONS_00046583 other downstream 179711 31218823 ~ 31223183 (-) True XLOC_023558
TCONS_00046577 other downstream 311946 31084689 ~ 31090948 (-) True XLOC_023555
TCONS_00046564 other downstream 1405704 29964976 ~ 29997190 (-) True XLOC_023547
TCONS_00046553 other downstream 1928919 29473856 ~ 29473975 (-) True XLOC_023538
TCONS_00046592 other upstream 217738 31640312 ~ 31640427 (-) True XLOC_023564
TCONS_00046593 other upstream 363889 31786463 ~ 31786577 (-) True XLOC_023567
TCONS_00046605 other upstream 750564 32173138 ~ 32196412 (-) True XLOC_023573
TCONS_00046633 other upstream 2690182 34112756 ~ 34115514 (-) True XLOC_023597
TCONS_00046660 other upstream 4872737 36295311 ~ 36300996 (-) True XLOC_023621

Expression Profile

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