RNA id: TCONS_00046589


Basic Information

Item Value
RNA id TCONS_00046589
length 2148
RNA type mRNA
GC content 0.46
exon number 19
gene id XLOC_023562
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 31430890 ~ 31452923 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTCATCGTTCATAAGAAAaattttggCAGCAGCTCCAGAACCAGCAGCACCAGCTAAGGAACCAGAGCCAGCAGCAGCTAAAGAACCAGAACAAGCAGCACCGGCTAAAGAACCAGAACCAGCAGCACCTGCTAAGGAACCAGAACCAGCAGCACCAGCGCCAGCTAAAGAACCAGAACCAGCAGCACCAGCGCCAGCTAAAGAACCAGAACCAGCAGCACCAGCTCCAGCTGCAAAACCAGAGGGGACACCTGCAGATCCACCCCGGCCGATTCTGATAAGCGAGGAAATTGATACTCATCTCATAGAGATGATTCAGAAACTTCGACAAAGGACTGAACAGTTTAAAGAAAAGGTCATCGATCCATACGCATCTTCCCCAGAGCGAAGCCCACCCGTCACACCCGTCCTGAGAAAAGATGACTACTATAAGAAACGACAAGAAGAGGAGGAAAGGATACGgaaagaggaggagaagaagagaaaagaggaggaggccaagaagaagaaagaagaagcagagaaaaaaaagaaagaggaagaagaaaaaaagaagaaagaggaggaggagaagaaaaaAGAACAAGCGGGAAAGCCTAAGAAGTCCATCTTTTCAAAAGTTAACTTCACCTGTGTGGATTTTGTCTTAAAGCCTTTTGAGATGAGAATGGACAACAGAATCGGCAAATCCATCGATCCTTTCACAGACCGCAGGTATATCACTTGGCTAAGTATGGTGACCATTGCCTTCAACTATAACCTGTGGTTTGTCCCAGTGCGCATGGCCTTCCCATACCATAGCCCAGAGGTCGTCCCATTGTGGTTCACCTTGGACATCATTGCTGATTTCATCTATATATTCGACATGATCTTTTTCCAGCCGCGACTGCAGTTCAGTAAAGGGGGAGACATCATTTATGACAGAGAAGTGATCAAAAAGAAATACCGTGAATCTGGAAGATTTCAGAATGATGTAATAGCTGTCCTGCCTATAGACCTGTTATATATCCCATTTGGATTCAATTCCGTCTTCAGACTCAATCGTCTGATGAAGGTGGAATCATTTTTTGAGTTCAGTGACCGTCTTGAAGGTCTCCTGACCAGAGCTTATATATGGAGAGTGATTCGCACTATTGGATACCTGCTGTTTATTCTCCACCTCAACGCTTGTCTTTACTACGTGGCATCAGTCTCCCAGGGCATCGGCTCCACCAAATGGGTTTATAGTGGAAAGGGCAGCGCGTATTTGCACAGTTACTATTTTGCCGTGCGGACTCTTATCAACATCGGTGGTCTGCCTGAGCCGCATACGATCTTTGAGATCAGCTTTCAGTTAACAAACTTTTTCGTTGGTGTCTTTGTCTTCTCAAGTTTGATTGGACAGATGCGAGATGTCATTGGCGCTGCTACTGCCGGTCAGACCTACTTCCGTGCATCTATGGATGCTTGTGTGGCGTATATGGTGACCAACCACATCCCTAAGATGGTTCAAAGTAGAGTGCGCACCTGGTACAACTACACCTGGGACTCCCAGGGCATGTTGGATGAGTCTGAGCTGCTGGGACAGATGCCTCTAGTGATGAGAACTGCCATCGCGGTGGACATCAACCTCGCTACTTTCCAAAAGATTGAACTCTTCAAGGGTTGTGACAACCAGATGCTTGTGGACATGTTATTGAGATTGAAATCCATTGTGTACTTGCCTGGAGATTTTGTGGTCAAGAAGGGTGACATTGGGAAGGAAATGTACATCATCAAAGCTGGAGAAGTGCAGGTCATCGGTGGACCAGATAACAAGATTGTGTTTGTGACTCTGAAAGCAGGCTGTGTGTTTGGGGAGATCAGTCTGCTTCAGTCTTCAGCCAATGGAGGAAACAGAAGAACGGCTAATGTAGCGGCTCACGGATTCGCAAATCTTTTCGTATTGGATAAAAAGGATCTCAATGATATCTTGATTCACTATCCTGAGTCTCAGAAAGTGCTGGCCAGGAAGGGACGTAAGCTGCTGAAAGCCAAGGGTCCTCCTCCAGCTGCAAAAGCCGACGAGGAAAAGAAGAAAGGCCTGGCTCTGTTTGGACAAAAACCTCCTACTCCAAAAATGTTGCGTGCCTTTAATGTCGTGCATAATATATCAACTTCACATTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000185128

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046578 lncRNA downstream 330039 31098534 ~ 31100851 (-) False XLOC_023556
TCONS_00046574 lncRNA downstream 349457 31055418 ~ 31081433 (-) True XLOC_023554
TCONS_00046875 lncRNA downstream 354361 31040020 ~ 31076529 (-) False XLOC_023554
TCONS_00046874 lncRNA downstream 458027 30927688 ~ 30972863 (-) True XLOC_023553
TCONS_00046873 lncRNA downstream 519025 30903443 ~ 30911865 (-) True XLOC_023552
TCONS_00046876 lncRNA upstream 2163 31455086 ~ 31458194 (-) False XLOC_023563
TCONS_00047218 lncRNA upstream 4165 31457088 ~ 31457818 (-) False XLOC_023563
TCONS_00047219 lncRNA upstream 4165 31457088 ~ 31457834 (-) False XLOC_023563
TCONS_00047220 lncRNA upstream 4165 31457088 ~ 31457843 (-) True XLOC_023563
TCONS_00047221 lncRNA upstream 256578 31709501 ~ 31717481 (-) True XLOC_023565
TCONS_00046588 mRNA downstream 5091 31406374 ~ 31425799 (-) True XLOC_023561
TCONS_00046587 mRNA downstream 8316 31402894 ~ 31422574 (-) False XLOC_023561
TCONS_00046585 mRNA downstream 98803 31310640 ~ 31332087 (-) False XLOC_023560
TCONS_00046584 mRNA downstream 124166 31294019 ~ 31306724 (-) True XLOC_023559
TCONS_00046582 mRNA downstream 207658 31201195 ~ 31223232 (-) False XLOC_023558
TCONS_00046594 mRNA upstream 379535 31832458 ~ 31846366 (-) False XLOC_023568
TCONS_00046595 mRNA upstream 381620 31834543 ~ 31843173 (-) True XLOC_023568
TCONS_00046596 mRNA upstream 443801 31896724 ~ 31904924 (-) False XLOC_023569
TCONS_00046597 mRNA upstream 444175 31897098 ~ 31905000 (-) False XLOC_023569
TCONS_00046598 mRNA upstream 444220 31897143 ~ 31904938 (-) True XLOC_023569
TCONS_00046586 other downstream 98977 31323355 ~ 31331913 (-) True XLOC_023560
TCONS_00046583 other downstream 207707 31218823 ~ 31223183 (-) True XLOC_023558
TCONS_00046577 other downstream 339942 31084689 ~ 31090948 (-) True XLOC_023555
TCONS_00046564 other downstream 1433700 29964976 ~ 29997190 (-) True XLOC_023547
TCONS_00046553 other downstream 1956915 29473856 ~ 29473975 (-) True XLOC_023538
TCONS_00046592 other upstream 187389 31640312 ~ 31640427 (-) True XLOC_023564
TCONS_00046593 other upstream 333540 31786463 ~ 31786577 (-) True XLOC_023567
TCONS_00046605 other upstream 720215 32173138 ~ 32196412 (-) True XLOC_023573
TCONS_00046633 other upstream 2659833 34112756 ~ 34115514 (-) True XLOC_023597
TCONS_00046660 other upstream 4842388 36295311 ~ 36300996 (-) True XLOC_023621

Expression Profile

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