RNA id: TU1619565


Basic Information

Item Value
RNA id TU1619565
length 901
RNA type TUCP
GC content 0.54
exon number 3
gene id G1416304
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 6168395 ~ 6169547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcacactctcttcccccttcacactctcttcccccttcacactctctccccccttcacactctcttccccttcacactctcttcccccttcacactctcttcccccttcacactctcttcccccttcacactctcttcccccttcacactctcttcccccttcacactctcttcccccttcacactctcttcccccttcatactcccttcccccttcacactctcttcccccttcacactctcttcccccttcacactctcttcccccttcacactctcttcccccttcacactctcttcccccttcacactctcttcccccttcatactcccttcccccttcacactctcttcccccttcacactctcttcccccttcataCTCTCTTCACGCTTCACGGTTGAGGTCTTTGAATTGTTGAAGCGCCCCTGCAGGACTCGGTCCCGGAACCTCTTGGGGTAGGAGACCTTGTCTCTCGCCAGAAGATTTCCCCAGAGAGCCATGATCTCCTCTATGTGCCTATTAGAGAACCATGCCCCTCCAGCAGCCTCACCAGACTCCTGGCCAGGAGGACCACGTGCTGGTATCCACTAACCCCATCAGGTCCTATGTTCTCCTGGTATCCACTAACCCCATCAGGTCCTATGTACTCCTGGTATCCACTAACCCCATCAGGTCCTATGTACTCCTGGTATCCACTAACCCCATCAGGTCCTATGTACTCCTGGTATCCACTAACCCCATCAGGTCCTATGTACTCCTGGTATCCACTAACCCCATCAGGTCCTATGTTCTCCTGGTATCCACTAACCCCATCAGGTCCTATGTACTCCTGGTATCCACTAACCCCATCAGGTCCTATGTTCTCCTGGTATCCACTAACCCCATCAGGTCCTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1619547 lncRNA upstream 66397 6093674 ~ 6101998 (+) False G1416299
TU1619550 lncRNA upstream 73065 6093674 ~ 6095330 (+) True G1416299
TU1619388 lncRNA upstream 83254 6084867 ~ 6085141 (+) True G1416153
TU1619535 lncRNA upstream 99288 6068763 ~ 6069107 (+) True G1416290
TU1619521 lncRNA upstream 146841 6019399 ~ 6021554 (+) True G1416277
TU1619573 lncRNA downstream 18456 6188003 ~ 6188990 (+) True G1416307
TU1619381 lncRNA downstream 37889 6207436 ~ 6212444 (+) True G1416146
TU1619593 lncRNA downstream 93171 6262718 ~ 6279470 (+) True G1416327
TU1619598 lncRNA downstream 122950 6292497 ~ 6296516 (+) True LOC118940064
TU1619605 lncRNA downstream 132216 6301763 ~ 6302047 (+) True G1416338
XR_005037234.1 mRNA upstream 11908 6156382 ~ 6156487 (+) True LOC118940646
XR_005037230.1 mRNA upstream 12871 6155417 ~ 6155524 (+) True LOC118940642
XR_005037214.1 mRNA upstream 13828 6154461 ~ 6154567 (+) True LOC118940626
XR_005037224.1 mRNA upstream 14787 6153502 ~ 6153608 (+) True LOC118940636
XR_005037213.1 mRNA upstream 15747 6152542 ~ 6152648 (+) True LOC118940625
XM_036947971.1 mRNA downstream 60522 6230069 ~ 6235946 (+) True LOC110515695
XM_036947968.1 mRNA downstream 76804 6246351 ~ 6250968 (+) True LOC118940017
XR_005036651.1 mRNA downstream 87049 6256596 ~ 6262067 (+) True LOC118940021
XM_036947955.1 mRNA downstream 100378 6269925 ~ 6278740 (+) True LOC110518718
XM_036948290.1 mRNA downstream 126807 6296354 ~ 6298972 (+) False LOC118940064
TU1619528 other upstream 102938 6057599 ~ 6065457 (+) True LOC110493338
TU1619087 other upstream 998822 5168936 ~ 5169573 (+) True G1415943
TU1617462 other upstream 1210990 4945537 ~ 4957405 (+) False LOC110514795
TU1619415 other downstream 46672 6216219 ~ 6217253 (+) True G1416180
TU1619658 other downstream 353957 6523504 ~ 6524855 (+) True LOC118940005
TU1619693 other downstream 448636 6618183 ~ 6650197 (+) True G1416413
TU1619752 other downstream 550240 6719787 ~ 6720394 (+) False G1416452
TU1619753 other downstream 550240 6719787 ~ 6720394 (+) True G1416452

Expression Profile