RNA id: TCONS_00046597


Basic Information

Item Value
RNA id TCONS_00046597
length 747
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_023569
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 31896724 ~ 31905000 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCACTTCCTGATTTTTCTTCAGTGAGCTAAGAGGAAGATTCAGTGTAGATAGAGAGTAAAACACAGATAAGAAGGACAAACTAAAAGACAGCTGCTCACCATGGGAGCTTCACAGAGCAAAGATAAGATGCACTGCACCAGATACCTGAATGGAAAAGGTCCTCCACCGCTGGCTGATACAGTTGCAGCAGATATCCAAGGACCAAACAGCCACAAAAAAAAATCGTTGATTAAGCAGGGAAGTCAGCCGGACGGAGGAAAGCTGGAGTGGGAGATTGAGAGGCGCAGTTTACCTGGTTATCCTGATGATGACACCATTAAGATCATCTTTCACTTTGAGGATGGCATTCAGTCGGATCGTCATCCTCATCCGGGTCACAGTTTCAGGGGCTCAGACACAGCGGTGTATCTTCCTCAGAACAGCTCAGGGACAAAGACCCTCCGTCTGCTGGAACAGGCCTTCCAACACAAGCTGCTGTTCACAGTGGCAGCAGACGGAAATGGAGAATACATAGTGACGCCCGCAGACATCCCTCTCAAGACCTGCGATAGCGGCGGACCGGCCAGCTTGGGTTATCCAGATCCTAATTACTTGAAAACAGTGAGGAAAAGTCTGGCAGTGAAGGGCATCGAATGAGGCCCAATGGACGGCTGAAACTAAAACTGCTGATCCTCATCATCACACTGGATATAATGGAGTTTCACATTTACAGGCCAATCTGCAGCATGCGGTTGAGTCTGATCAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154276

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047222 lncRNA downstream 140747 31755247 ~ 31756351 (-) True XLOC_023566
TCONS_00047221 lncRNA downstream 179617 31709501 ~ 31717481 (-) True XLOC_023565
TCONS_00047220 lncRNA downstream 439255 31457088 ~ 31457843 (-) True XLOC_023563
TCONS_00047219 lncRNA downstream 439264 31457088 ~ 31457834 (-) False XLOC_023563
TCONS_00047218 lncRNA downstream 439280 31457088 ~ 31457818 (-) False XLOC_023563
TCONS_00047223 lncRNA upstream 457433 32362433 ~ 32363362 (-) True XLOC_023574
TCONS_00046877 lncRNA upstream 501894 32406894 ~ 32408404 (-) False XLOC_023575
TCONS_00047224 lncRNA upstream 802441 32707441 ~ 33044880 (-) False XLOC_023581
TCONS_00046614 lncRNA upstream 965701 32870701 ~ 33020894 (-) False XLOC_023581
TCONS_00047225 lncRNA upstream 1126176 33031176 ~ 33220301 (-) False XLOC_023581
TCONS_00046594 mRNA downstream 50732 31832458 ~ 31846366 (-) False XLOC_023568
TCONS_00046595 mRNA downstream 53925 31834543 ~ 31843173 (-) True XLOC_023568
TCONS_00046589 mRNA downstream 444175 31430890 ~ 31452923 (-) False XLOC_023562
TCONS_00046591 mRNA downstream 444223 31431422 ~ 31452875 (-) True XLOC_023562
TCONS_00046590 mRNA downstream 457257 31431422 ~ 31439841 (-) False XLOC_023562
TCONS_00046599 mRNA upstream 35504 31940504 ~ 31942656 (-) False XLOC_023570
TCONS_00046600 mRNA upstream 35504 31940504 ~ 31942686 (-) True XLOC_023570
TCONS_00046602 mRNA upstream 47333 31952333 ~ 32025637 (-) False XLOC_023571
TCONS_00046601 mRNA upstream 47333 31952333 ~ 32025637 (-) True XLOC_023571
TCONS_00046603 mRNA upstream 130759 32035759 ~ 32150276 (-) True XLOC_023572
TCONS_00046593 other downstream 110521 31786463 ~ 31786577 (-) True XLOC_023567
TCONS_00046592 other downstream 256671 31640312 ~ 31640427 (-) True XLOC_023564
TCONS_00046586 other downstream 565185 31323355 ~ 31331913 (-) True XLOC_023560
TCONS_00046583 other downstream 673915 31218823 ~ 31223183 (-) True XLOC_023558
TCONS_00046577 other downstream 806150 31084689 ~ 31090948 (-) True XLOC_023555
TCONS_00046605 other upstream 268138 32173138 ~ 32196412 (-) True XLOC_023573
TCONS_00046633 other upstream 2207756 34112756 ~ 34115514 (-) True XLOC_023597
TCONS_00046660 other upstream 4390311 36295311 ~ 36300996 (-) True XLOC_023621
TCONS_00046677 other upstream 5456189 37361189 ~ 37367348 (-) False XLOC_023644
TCONS_00046678 other upstream 5461431 37366431 ~ 37404466 (-) True XLOC_023644

Expression Profile

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