RNA id: TU1619751


Basic Information

Item Value
RNA id TU1619751
length 325
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1416451
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 6719571 ~ 6720681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcctagattggttctcaatcagaggataTATATagaggaggtaccagtacagtgtcaatgtggaggctatatacagggggtaccagtacagagtcaatgtagaggctatatacaggaggtaccagtacagagtcaatgtggaggctatataccggaggtaccagtacagagtcaatgtggaggctatatatagggggtaccagtacagggtcaatgtgaaggctatatacaggaggtaccagtacagagtcaatgtggaggctatatacagggggtaccagtacagagtcaatgtggaggctatatacagggggtaccagtacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1619733 lncRNA upstream 12983 6705122 ~ 6706588 (+) True G1416439
TU1619721 lncRNA upstream 36015 6677782 ~ 6683556 (+) False G1416429
TU1619718 lncRNA upstream 36015 6679906 ~ 6683556 (+) True G1416429
TU1619705 lncRNA upstream 63161 6654467 ~ 6656410 (+) True LOC118940233
TU1619682 lncRNA upstream 106269 6605003 ~ 6613302 (+) True G1416405
TU1619755 lncRNA downstream 4234 6724915 ~ 6754655 (+) True G1416453
TU1619738 lncRNA downstream 20661 6741342 ~ 6803462 (+) True G1416440
TU1619762 lncRNA downstream 29336 6750017 ~ 6783653 (+) True G1416459
TU1619746 lncRNA downstream 114191 6834872 ~ 6935715 (+) True G1416446
TU1619827 lncRNA downstream 222697 6943378 ~ 7015055 (+) True G1416509
XR_002472149.2 mRNA upstream 58793 6636106 ~ 6660778 (+) False LOC110514651
XR_005036760.1 mRNA upstream 58793 6636107 ~ 6660778 (+) False LOC110514651
XM_021593942.2 mRNA upstream 58793 6639422 ~ 6660778 (+) False LOC110514651
XM_021593943.2 mRNA upstream 58793 6639422 ~ 6660778 (+) True LOC110514651
XR_005036766.1 mRNA upstream 62597 6654468 ~ 6656974 (+) False LOC118940233
XR_005036770.1 mRNA downstream 645255 7365936 ~ 7381254 (+) False LOC118940246
XM_021556421.2 mRNA downstream 816610 7537291 ~ 7543177 (+) False LOC110485353
XM_021556419.2 mRNA downstream 816624 7537305 ~ 7543177 (+) False LOC110485353
XM_036948740.1 mRNA downstream 816637 7537318 ~ 7543177 (+) False LOC110485353
XM_036948741.1 mRNA downstream 816637 7537318 ~ 7543177 (+) False LOC110485353
TU1619693 other upstream 69374 6618183 ~ 6650197 (+) True G1416413
TU1619658 other upstream 194716 6523504 ~ 6524855 (+) True LOC118940005
TU1619415 other upstream 502318 6216219 ~ 6217253 (+) True G1416180
TU1619565 other upstream 550024 6168395 ~ 6169547 (+) False G1416304
TU1619768 other downstream 32121 6752802 ~ 6769590 (+) True G1416462
TU1619900 other downstream 607374 7328055 ~ 7334299 (+) True G1416559
TU1620948 other downstream 882074 7602755 ~ 7606668 (+) True G1417359
TU1621141 other downstream 977246 7697927 ~ 7698422 (+) False G1417508
TU1621142 other downstream 977302 7697983 ~ 7698422 (+) True G1417508

Expression Profile