RNA id: TU1622387


Basic Information

Item Value
RNA id TU1622387
length 373
lncRNA type read_through
GC content 0.46
exon number 2
gene id G1418296
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9368181 ~ 9512400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTTTCATGTGGCACTGTCTGTCTTAGgtgttctatttctatgttggggAATGGGACTAATGCTCtacatattgtatatctatgagtgggactCACCCTCTGTGCCGTCTGGCTCGGCCTGCTCCTCACGCTGCTTCTGCTTGAATTTCAAGTTTCCATGGTGCACTACAGCTCCTGTCAGCTTGTAGATGCCAATCTTCTCTTCATTAGTGAAGCCCAGGATGGTAATGGCATCCTGGCATTAAAGAGGAAGTACCACAGTGATGAACTGAACTGTAGTTTGGTCAGTTACACTACAGTTCTGTGCTGCTCACTGCAGAACAAATGGGATGGATAGATTTGACTGGCTTCTCTGTTCCACATGATTACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1622199 lncRNA upstream 131 9313938 ~ 9368050 (+) True G1418126
TU1622360 lncRNA upstream 4993 9309909 ~ 9363188 (+) True G1418272
TU1622377 lncRNA upstream 6644 9340484 ~ 9361537 (+) True G1418286
TU1622108 lncRNA upstream 11396 9301272 ~ 9356785 (+) True G1418120
TU1622358 lncRNA upstream 12729 9300322 ~ 9355452 (+) True G1418270
TU1622448 lncRNA downstream 24393 9536793 ~ 9537078 (+) True G1418352
TU1622455 lncRNA downstream 33125 9545525 ~ 9546046 (+) True G1418359
TU1622456 lncRNA downstream 37464 9549864 ~ 9550087 (+) True G1418360
TU1622459 lncRNA downstream 39228 9551628 ~ 9551876 (+) True G1418363
TU1622464 lncRNA downstream 43195 9555595 ~ 9568379 (+) True G1418367
XM_036948823.1 mRNA upstream 72207 9281460 ~ 9295974 (+) False LOC110487204
XM_036948822.1 mRNA upstream 72207 9281525 ~ 9295974 (+) False LOC110487204
XM_036948826.1 mRNA upstream 72207 9281672 ~ 9295974 (+) False LOC110487204
XR_005036788.1 mRNA upstream 73323 9281433 ~ 9294858 (+) False LOC110487204
XM_036948825.1 mRNA upstream 75387 9281432 ~ 9292794 (+) False LOC110487204
XM_036948841.1 mRNA downstream 69209 9581609 ~ 9592311 (+) False LOC110493376
XM_036948842.1 mRNA downstream 69209 9581609 ~ 9592311 (+) False LOC110493376
XM_036948843.1 mRNA downstream 69209 9581609 ~ 9592311 (+) False LOC110493376
XM_036948844.1 mRNA downstream 70990 9583390 ~ 9592311 (+) False LOC110493376
XM_036948845.1 mRNA downstream 87934 9600334 ~ 9685183 (+) False LOC110510389
TU1622109 other upstream 7419 9307031 ~ 9360762 (+) False LOC110510627
TU1622153 other upstream 7419 9307031 ~ 9360762 (+) False LOC110510627
TU1622155 other upstream 7660 9307031 ~ 9360521 (+) False LOC110510627
TU1622150 other upstream 8226 9306512 ~ 9359955 (+) False LOC110510627
TU1622114 other upstream 62541 9304567 ~ 9305640 (+) False LOC110510627
TU1622484 other downstream 76689 9589089 ~ 9589954 (+) False LOC110493376
TU1622481 other downstream 101431 9613831 ~ 9614948 (+) True LOC110510389
TU1622637 other downstream 426073 9938473 ~ 9939331 (+) True G1418488
TU1622613 other downstream 520447 10032847 ~ 10034985 (+) False G1418476
TU1622615 other downstream 520447 10032847 ~ 10034985 (+) False G1418476

Expression Profile