RNA id: TU1629043


Basic Information

Item Value
RNA id TU1629043
length 311
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G1423069
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15497681 ~ 15497991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCTCTACCTCAACCCCACTCAGGGCTCCAGAGACCTGGGTTACTGCGGCTAGCAAGATCCCCTGACCAGAGACCAAGTGGAGGGTTGAAAATGGTCCAAATGTTCCTAATAGAAAAGGGAAGATCAGAAAaccaccttctggaaacagagaGGTGAAGTAGTCAGTCCTCAGATGACCGGTCACTGATACTTCATCCCAGCCTGGCTTTAAAACCAGACGTTCTCTTTATTATCTGGTTTAGACCTCTGTCCAAAAAGCTTTCCttctttctatctccctctcgTGCTTTCGTCTTCTTGGttgtgctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1629041 lncRNA downstream 1816 15495060 ~ 15495865 (-) True G1423067
TU1629042 lncRNA downstream 3393 15493849 ~ 15494288 (-) True G1423068
TU1629030 lncRNA downstream 14204 15483142 ~ 15483477 (-) True G1423060
TU1629022 lncRNA downstream 25640 15471825 ~ 15472041 (-) True G1423053
TU1629000 lncRNA downstream 71379 15377339 ~ 15426302 (-) True G1423032
TU1629044 lncRNA upstream 3141 15501132 ~ 15502500 (-) True G1423070
TU1629045 lncRNA upstream 4933 15502924 ~ 15503151 (-) True G1423071
TU1629050 lncRNA upstream 11572 15509563 ~ 15509806 (-) True G1423075
TU1629074 lncRNA upstream 46339 15544330 ~ 15544573 (-) True G1423093
TU1629076 lncRNA upstream 51327 15549318 ~ 15549584 (-) True G1423095
XM_036948329.1 mRNA downstream 29425 15444480 ~ 15468256 (-) True LOC118936458
XM_036948328.1 mRNA downstream 59276 15288411 ~ 15438405 (-) False LOC118940092
XR_005036852.1 mRNA upstream 116873 15614864 ~ 15625537 (-) False LOC118940331
XR_005036851.1 mRNA upstream 116873 15614864 ~ 15625543 (-) False LOC118940331
XM_036948330.1 mRNA upstream 129557 15627548 ~ 15704265 (-) False LOC110485613
XM_036949091.1 mRNA upstream 246224 15744215 ~ 15760194 (-) True LOC110487262
XM_036949087.1 mRNA upstream 279696 15777687 ~ 15797879 (-) True LOC110485609
TU1628867 other downstream 84084 15397290 ~ 15413597 (-) True G1422920
TU1628865 other downstream 92507 15383119 ~ 15405174 (-) True G1422918
TU1628810 other downstream 144591 14926365 ~ 15353090 (-) False G1422891
TU1629094 other upstream 85704 15583695 ~ 15584093 (-) True G1423112
TU1629986 other upstream 310695 15808686 ~ 15831010 (-) True G1423836
TU1630061 other upstream 487282 15985273 ~ 15986842 (-) True G1423891
TU1630241 other upstream 871766 16369757 ~ 16370443 (-) True G1424040
TU1630255 other upstream 908740 16406731 ~ 16410128 (-) False G1424051

Expression Profile