RNA id: TU1629894


Basic Information

Item Value
RNA id TU1629894
length 507
lncRNA type intronic
GC content 0.33
exon number 3
gene id G1423768
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15644430 ~ 15645067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctactatagggccaatggggttctggtcaaaagtagtgcactacatagggaatagggtgccatttgcgacgaAGCCTAgctaacagtctgtctgtagtgttacaGAGAGGTATTAAACAACATGTCCTGTAGGTCTACATCTATGTCCACATTctaacagtctgtctgtacaGAGAGGTATTAAAAAACATGTCCTGTCGGTATATATCTATGTCCTGTAGGTCTACATCTATGTCCACATTCTAACAAGTCTatttttaataaaaatgtatgtgtgtatatattatatatatatatatatatatatatatatattatatatatttttttttcttcacatataaACAGTaatatttcctggttgctaaaattagaatagttcgcctaatttcagtttatgttacAAAACAAGTCATGTAGAGCTGAGAAAGTTGCTGTACggtctaaaccgctgtgaaatgtattttcaatAACCAATAATATAGTATGTTCAGCTGTCTGAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1629152 lncRNA downstream 3871 15639818 ~ 15640559 (-) True G1423155
TU1629147 lncRNA downstream 14877 15629083 ~ 15629553 (-) False LOC110485613
TU1629141 lncRNA downstream 16382 15627128 ~ 15628048 (-) False LOC110485613
TU1629139 lncRNA downstream 17961 15623821 ~ 15626469 (-) True LOC118940331
TU1629138 lncRNA downstream 18053 15623821 ~ 15626377 (-) False LOC118940331
TU1629891 lncRNA upstream 1903 15646970 ~ 15704231 (-) True LOC110485613
TU1629918 lncRNA upstream 49072 15694139 ~ 15694552 (-) True G1423786
TU1629940 lncRNA upstream 85974 15731041 ~ 15731440 (-) True G1423803
TU1629942 lncRNA upstream 94224 15739291 ~ 15739676 (-) True G1423805
TU1629912 lncRNA upstream 95715 15740782 ~ 15741544 (-) True G1423783
XR_005036851.1 mRNA downstream 18887 15614864 ~ 15625543 (-) False LOC118940331
XR_005036852.1 mRNA downstream 18893 15614864 ~ 15625537 (-) False LOC118940331
XM_036948329.1 mRNA downstream 176174 15444480 ~ 15468256 (-) True LOC118936458
XR_005036848.1 mRNA downstream 269313 15373361 ~ 15375117 (-) True LOC118940327
XM_036949070.1 mRNA downstream 297145 15317751 ~ 15347285 (-) True LOC118940323
XM_036949091.1 mRNA upstream 99148 15744215 ~ 15760194 (-) True LOC110487262
XM_036949087.1 mRNA upstream 132620 15777687 ~ 15797879 (-) True LOC110485609
XR_005036850.1 mRNA upstream 205607 15850674 ~ 15871462 (-) False LOC110487244
XM_036949088.1 mRNA upstream 205607 15850674 ~ 15871731 (-) False LOC110487244
XM_036948331.1 mRNA upstream 253819 15898886 ~ 15917523 (-) True LOC110518551
TU1629094 other downstream 60337 15583695 ~ 15584093 (-) True G1423112
TU1628867 other downstream 230833 15397290 ~ 15413597 (-) True G1422920
TU1628865 other downstream 239256 15383119 ~ 15405174 (-) True G1422918
TU1628844 other downstream 309539 15333878 ~ 15334891 (-) True G1422897
TU1628852 other downstream 397088 15006839 ~ 15247342 (-) True LOC118940320
TU1629986 other upstream 163619 15808686 ~ 15831010 (-) True G1423836
TU1630061 other upstream 340206 15985273 ~ 15986842 (-) True G1423891
TU1630241 other upstream 724690 16369757 ~ 16370443 (-) True G1424040
TU1630255 other upstream 761664 16406731 ~ 16410128 (-) False G1424051
TU1630257 other upstream 761664 16406731 ~ 16410128 (-) False G1424051

Expression Profile