RNA id: TU1629994


Basic Information

Item Value
RNA id TU1629994
length 2005
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G1423844
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15835574 ~ 15838677 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAAAGTAGCAAAATATGGAATTTATTCGTTTTCGAAAGCAAGTTATGAGATTTTATAAAATGGTGTTAGTTGTGTTCAGAGCCCAAGGTTGGATTCCATTTCAATTTCTGCCATTCCAGGACTTTTTTTAATGAGAAAATGGAATTAATCAAATAAATGTCAATGGATTACATAAGCTTGAAAACAATCAAACACTCTCTTTCACTTCTCATGTCATCGTGGCTAAAGAAACATTAGAAATATCAAGCAAATCCTTGAGATTGGGAACTTCACCTATAGGCCATCAGTGTTGAATAATCCGGACATCCTTTTAAGCACATGCTTACAAGTAACTAGACCACCCTTAGTCCGTATATCACAATTATCAAACGTCTAGTCTCGTGACTAGGCCTATCCTATATATCCAACGTTAACTGGATAGTTGGTCATTCAAATAAAATGCGACCATTGTTGGTCATAAATCCATTTCAACCGTTACGCACAGCTTCTTTCTGATGACCGTCACCGAGAGTGGAGTAAACATGTTGAATTTGCACCTTTTCAGTCTTAATCCAACGACAGCCACCCCACCAGGCAGACACGAAGGACAATAACTACATAAAAACAACACTGTTTCCGAAATACTGCAGAGAAATAACTCCCTTTATTTTAAAAAGGGGAAGAACCCTTTAAAAAACGGCATGAGAGGATTCGATTAATGTCACCGGTGAGGGTGTAAAACAATGCTCTGGTTTTATCCAAGGTGTAACCGGAGTGGGGCTACCAGGCCCGGATCCCTTGCAGTGAGCCCTGACATGTCGTGACCGCTGTCCCTTGGTGCGTTTGGGGCTGTGGAGAGGCGCTAAGCCCCCCAATGTTCCCCAAGTTCATGGCCATGAAGGGGTTAGCCGTGGTGGTTGGGGGGAGAGTAGGGATACTGGTGTAagtacagctgtaattgctgttgTATGCCGGGTTGTTGTACGTGTAGGCCTGGTATCCGTTGTAACTATAGGGGTTCGACCCGTACGGAGCATTGTAGTTCTGAGTCCCGCCCAGACAGGGCTTCCCATCCCGGACCAGGACCGGCACCGCGACTCGTCTTGGCGGGGGAGGGTGGTGGTGTCCTGCCAGCTCCAGGGACTTGTCCTGCCGCTGCCGCTTACACTTGTACCGTCGGTTCTGGAACCAGATTTTGACCTGCGTGGAGGTGAGTTTGAGAGTGCTCGCCAGGTGTTCTCGTTCAGGAGCGGACAGGTACCGCTGCTGCTTGAAGCGTCGCTCTAACTCGAACACCTGGGCTTGGGAGAAGAGGACCCGGGGTTTCCGTCTGGTTCTCTGCTTGGCCGGCCGATCCGAGTCCCCCTGGCCGCTGTCCTCACCCTCCAGCGGCTTGGACACCACGCCACAGCTCTTGTTTTCCTGATCCTCCAGGTCTACCTCCAGCTTCGGGTCGATCAGGTGACCCATCCCGGGATGAACGAACATCTCCGGGGACAGACTGGCCTCTCCATGCCCGTCCTGGGCCGCCAGAGAACTCAGGTAAGCCATGTTGTCTTCCCCGTCCGAGAACGGAGGGCTGTCGACCGCTGAAGCAAGCATACAGGACGGTGGCGCCTGGAAGTGCTGGGACTGGGTCTGCTGTTGCTGGGTCGAGTCCGGGTGTACTAAGTGTTGTTGGGTGTGGGACAGGTGTTGGATCTGTAGCGGGTCCAGATGTCGAGATTGGTGCTGTTGAGATCGctgcctctgctgctgctgctctagCTGTTCGAGTTTCAGAATATCCTTGACTGAGAACGGCGTGGAAGTGAGCGGGCTCGGGAGCATCATGCCATCGAGGTCCTGCTCGCGCGCATCAAGGAAATGGAACCCGCTGAGTAACATATGATACTATATACCCCGTTTTAAATAATACTTGATTTAGAGGCTCTGTAATCGGAGGTGCGCGCGCTAAACGGCTGGATATCCCAACTCATCCCCTGATGAAAATAAACAAAGGTTTGGTTAAAGGTTTAGTCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1629983 lncRNA downstream 31006 15804345 ~ 15804568 (-) True G1423834
TU1629966 lncRNA downstream 59593 15764275 ~ 15775981 (-) True G1423821
TU1629912 lncRNA downstream 94030 15740782 ~ 15741544 (-) True G1423783
TU1629942 lncRNA downstream 95898 15739291 ~ 15739676 (-) True G1423805
TU1629940 lncRNA downstream 104134 15731041 ~ 15731440 (-) True G1423803
TU1629996 lncRNA upstream 1620 15840297 ~ 15840845 (-) True G1423845
TU1629954 lncRNA upstream 12287 15850964 ~ 15852360 (-) True LOC110487244
TU1630009 lncRNA upstream 33549 15872226 ~ 15874049 (-) True G1423856
TU1630023 lncRNA upstream 47013 15885690 ~ 15887204 (-) True G1423864
TU1629955 lncRNA upstream 52391 15891068 ~ 15892285 (-) True G1423812
XM_036949087.1 mRNA downstream 37695 15777687 ~ 15797879 (-) True LOC110485609
XM_036949091.1 mRNA downstream 75380 15744215 ~ 15760194 (-) True LOC110487262
XM_036948330.1 mRNA downstream 131309 15627548 ~ 15704265 (-) False LOC110485613
XR_005036851.1 mRNA downstream 210031 15614864 ~ 15625543 (-) False LOC118940331
XR_005036852.1 mRNA downstream 210037 15614864 ~ 15625537 (-) False LOC118940331
XR_005036850.1 mRNA upstream 11997 15850674 ~ 15871462 (-) False LOC110487244
XM_036949088.1 mRNA upstream 11997 15850674 ~ 15871731 (-) False LOC110487244
XM_036948331.1 mRNA upstream 60209 15898886 ~ 15917523 (-) True LOC110518551
XM_036949095.1 mRNA upstream 98035 15936712 ~ 15938552 (-) False LOC110485584
XM_036949105.1 mRNA upstream 442720 16281397 ~ 16330030 (-) True LOC118940334
TU1629986 other downstream 4564 15808686 ~ 15831010 (-) True G1423836
TU1629094 other downstream 251481 15583695 ~ 15584093 (-) True G1423112
TU1628867 other downstream 421977 15397290 ~ 15413597 (-) True G1422920
TU1628865 other downstream 430400 15383119 ~ 15405174 (-) True G1422918
TU1628844 other downstream 500683 15333878 ~ 15334891 (-) True G1422897
TU1630061 other upstream 146596 15985273 ~ 15986842 (-) True G1423891
TU1630241 other upstream 531080 16369757 ~ 16370443 (-) True G1424040
TU1630255 other upstream 568054 16406731 ~ 16410128 (-) False G1424051
TU1630257 other upstream 568054 16406731 ~ 16410128 (-) False G1424051
TU1630259 other upstream 568054 16406731 ~ 16410128 (-) True G1424051

Expression Profile