RNA id: TCONS_00046703



Basic Information


Item Value
RNA id TCONS_00046703
length 678
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_023663
representative True

Chromosome Information


Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38130604 ~ 38131381 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGTTGGGCTTTATTTTCACTCTGCTCATTCTGACACCAGCAGCTGCTGAAGTGGGTCTTGGTGGAAAAGTTCTTTTGTTTCAAACCCAAACTGCTACCAGTTATGTTAAACTGACTCCTGATAAACCCCTGAGTCTGTCAGCGTTTACTCTCTGCATGCGTGTGGCGACCGAGCTGCTGGGCGAGCGATCGGTCATTCTGTTCGCCTACCGCACTTCTGAAGTTGATGAACTCAATGTGTGGAGACGGAAAAATGGCAGTGTGGGTTTGTTTATTCAGACTAGTAGCAATCCAGCAAGTTTCTATCTTCCCCCTCTCTCCACATTTCAGACACATCTGTGTGTGTCCTGGGAGTCTGCAACTGGTCTTACTGCTTTTTGGGTGGACGGGCGTCGCAGTTTGTACCAGATCTATAAGAAAGATGCCTCTGTCAGACCTGGCGGCACCGTACTGCTCGGACAGGACCCTGACTCATATGTAGGTTCGTTTGACGCAAATCAGTGCTTTATTGGTGAAATTACAGATGTGAAACTGTGGGATTATGTTCTGTCTGAGATCCAGATTAAGGCTTTGTATTCAAACCAGGATCCGTTGGTGCCAGCGGGAAATGTGTTTGACTGGGACACCGTCAAATATGATGTTGTTGGAAATGTGACGGTGGCTAATGATAATCACTGA

Function


GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-881 Predicted to enable metal ion binding activity. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; autoimmune disease (multiple); macular degeneration (multiple); middle cerebral artery infarction; and nephritis (multiple). Orthologous to human CRP (C-reactive protein) and APCS (amyloid P component, serum).

Ensembl:

ensembl_id ENSDART00000105666

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00047258 lncRNA downstream 8483 38121414 ~ 38122121 (-) True XLOC_023662
TCONS_00046695 lncRNA downstream 38016 38085317 ~ 38092588 (-) True XLOC_023658
TCONS_00047257 lncRNA downstream 403655 37724974 ~ 37726949 (-) True XLOC_023652
TCONS_00047256 lncRNA downstream 422553 37705626 ~ 37708051 (-) True XLOC_023651
TCONS_00046681 lncRNA downstream 657633 37467001 ~ 37472971 (-) True XLOC_023645
TCONS_00047259 lncRNA upstream 66457 38197838 ~ 38215482 (-) True XLOC_023667
TCONS_00046880 lncRNA upstream 79722 38211103 ~ 38212927 (-) False XLOC_023669
TCONS_00047260 lncRNA upstream 109793 38241174 ~ 38251085 (-) False XLOC_023670
TCONS_00047261 lncRNA upstream 109793 38241174 ~ 38252296 (-) True XLOC_023670
TCONS_00046719 lncRNA upstream 392612 38523993 ~ 38524619 (-) True XLOC_023675
TCONS_00046702 mRNA downstream 8684 38121403 ~ 38121920 (-) False XLOC_023662
TCONS_00046701 mRNA downstream 17396 38109814 ~ 38113208 (-) True XLOC_023661
TCONS_00046700 mRNA downstream 19825 38109799 ~ 38110779 (-) False XLOC_023661
TCONS_00046696 mRNA downstream 33299 38092608 ~ 38097305 (-) False XLOC_023659
TCONS_00046704 mRNA upstream 6092 38137473 ~ 38138307 (-) False XLOC_023664
TCONS_00046705 mRNA upstream 6126 38137507 ~ 38192003 (-) True XLOC_023664
TCONS_00046707 mRNA upstream 62755 38194136 ~ 38197040 (-) False XLOC_023666
TCONS_00046708 mRNA upstream 62942 38194323 ~ 38197040 (-) True XLOC_023666
TCONS_00046709 mRNA upstream 70917 38202298 ~ 38205133 (-) False XLOC_023668
TCONS_00046699 other downstream 30929 38098896 ~ 38099675 (-) True XLOC_023660
TCONS_00046678 other downstream 726138 37366431 ~ 37404466 (-) True XLOC_023644
TCONS_00046677 other downstream 763256 37361189 ~ 37367348 (-) False XLOC_023644
TCONS_00046660 other downstream 1829608 36295311 ~ 36300996 (-) True XLOC_023621
TCONS_00046633 other downstream 4015090 34112756 ~ 34115514 (-) True XLOC_023597
TCONS_00046706 other upstream 46580 38177961 ~ 38178027 (-) True XLOC_023665
TCONS_00046711 other upstream 79722 38211103 ~ 38212927 (-) False XLOC_023669
TCONS_00046712 other upstream 79902 38211283 ~ 38212872 (-) True XLOC_023669
TCONS_00046716 other upstream 239850 38371231 ~ 38384275 (-) True XLOC_023672
TCONS_00046717 other upstream 265191 38396572 ~ 38397488 (-) True XLOC_023673

Expression Profile


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