RNA id: TU1630132



Basic Information


Item Value
RNA id TU1630132
length 203
lncRNA type intronic
GC content 0.54
exon number 1
gene id G1423958
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 16156097 ~ 16156299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtttgccaaaaggcaccttccCAATGACTGCCCTTAATAAGGTAATTATAGTAATAGCAtcttgtcaggctgtatcactgcctggtacagcaactgctccgcctgcaactgcagggctctccagggggtggtgcggtctgccaaatgcatcaccgggggcacactgcctgccctcaaggacaacaacagcacctgatgtcaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1630059 lncRNA downstream 38549 16104307 ~ 16117548 (-) True G1423889
TU1630058 lncRNA downstream 49624 16104307 ~ 16106473 (-) False G1423889
TU1630054 lncRNA downstream 52929 16036278 ~ 16103168 (-) False G1423888
TU1630056 lncRNA downstream 52929 16037968 ~ 16103168 (-) True G1423888
TU1630107 lncRNA downstream 53282 16100337 ~ 16102815 (-) True G1423933
TU1630136 lncRNA upstream 6058 16162357 ~ 16162659 (-) True G1423962
TU1630138 lncRNA upstream 9358 16165657 ~ 16166274 (-) True G1423964
TU1630141 lncRNA upstream 15072 16171371 ~ 16224652 (-) True G1423967
TU1630151 lncRNA upstream 21589 16177888 ~ 16237985 (-) True G1423969
TU1630193 lncRNA upstream 85398 16241697 ~ 16242012 (-) True G1424007
XM_036949095.1 mRNA downstream 217545 15936712 ~ 15938552 (-) False LOC110485584
XM_036948331.1 mRNA downstream 238574 15898886 ~ 15917523 (-) True LOC110518551
XM_036949088.1 mRNA downstream 284366 15850674 ~ 15871731 (-) False LOC110487244
XR_005036850.1 mRNA downstream 284635 15850674 ~ 15871462 (-) False LOC110487244
XM_036949087.1 mRNA downstream 358218 15777687 ~ 15797879 (-) True LOC110485609
XM_036949105.1 mRNA upstream 125098 16281397 ~ 16330030 (-) True LOC118940334
XM_036949103.1 mRNA upstream 203047 16359346 ~ 16373438 (-) False LOC110515368
XM_036949104.1 mRNA upstream 203047 16359346 ~ 16373440 (-) False LOC110515368
XM_036949102.1 mRNA upstream 217426 16373725 ~ 16397326 (-) False LOC110512844
XM_036949100.1 mRNA upstream 217426 16373725 ~ 16399997 (-) False LOC110512844
TU1630061 other downstream 169255 15985273 ~ 15986842 (-) True G1423891
TU1629986 other downstream 325087 15808686 ~ 15831010 (-) True G1423836
TU1629094 other downstream 572004 15583695 ~ 15584093 (-) True G1423112
TU1628867 other downstream 742500 15397290 ~ 15413597 (-) True G1422920
TU1628865 other downstream 750923 15383119 ~ 15405174 (-) True G1422918
TU1630241 other upstream 213458 16369757 ~ 16370443 (-) True G1424040
TU1630255 other upstream 250432 16406731 ~ 16410128 (-) False G1424051
TU1630257 other upstream 250432 16406731 ~ 16410128 (-) False G1424051
TU1630259 other upstream 250432 16406731 ~ 16410128 (-) True G1424051
TU1630234 other upstream 255759 16412058 ~ 16414859 (-) False G1424038

Expression Profile