RNA id: TU1630640


Basic Information

Item Value
RNA id TU1630640
length 1768
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G1424337
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 17082021 ~ 17084360 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGGGTTCCAATTTTATTCATCATTGGGACTTGATGCATCCAAGATAAGGATCGTTTGATTCATTTTGGCACCTTGAAAAGACGTTAAGCTTTTTTATTTTCATTGAAACAACACAAcgcaaagaaagaaagaaagaaagaaagaccaTAAGGCTGTGTGAGATTTCAAAATGAAGATGACATAAGTATTCGTTCCAAAGAAATCCGTAGTTTTTTCTCTTATTTAAAAAAAGGCGTTACGTTCGTCAAAGTTTGTTTCTTTGATTAGTTTACGCCCCTTGAAAGCATTGTTAAATGAAGCCCCGCCCCTTCTCCCTGCCTGTCGTCCACAAAAGAGAAATACACACATTACATGAACATTTTAACTGCCAACTTGGTTTCCACAACAACCCCCCCACTGCATTGTGTTCAACATGTAGGTTGGATGATTTGATTAGCATGCATGTAGAGTTCTTAACATGGGAGTCACTCAGGCTTAGCTTCGTCTAGTTGATCATCTTCTCTCACGGTTtcctcttgttttttttttatagcagTGTCCTTTGCAAAGTGTCCGTTTGTCTTAGAGTAAGTAGTTCACTGTCCGATTACCCAGAACTCATGTGGCTCCTCGTGTGACTCCCCTCTGGACTCTACCTCTTTTTTTTGTAGCGTCGTCCGTCCGAAGAGGAAGTGATGTCGACGTTTGACATTTCACCTATCACCCCCTATTGACCTTTGGCCCCAAAACAAATATGGTCTCGGTCCAGGGACCTGAGTCAGCAGAAAGGTAACAGAAGGAATCACTTAAAAACAATAGaatctatctatatattattaacTAAACTGCTTGTTGGCTAGTTGCCATGGTTCCCTGTAAGCTATGTTTACGTCacttcctgttgttgttgtttttcagtcCCAATGAATCAACTCGTTCCTCCTCCTCCGCTGTAGTTTCCATGACGACTTGATTTCGTTTCACCTTGTTTGTCGTTATGTCATTTGAGTTATTTTCACGTTTTGCGTCAGGGAAGTCTCTCTGTGATTCAGTaacatatatattcatatattcatatataATTGATACATATATTAACTTAGACCATTACTTTTTTTTGCGGTCTGGATTCCCTCCCTGCGTTAAAGTCCCAACCCACAATGGTTCACAGTATTCAtgtgaaaaatgtaaaaaaaaatgatgaaATCAAACAGAGCAACTAAAGAgaagagtgttggagtgttgggaaggagggggagaaggggtgtagggaaggagggggagaaggggtgtagggaaggagggggagaaggggtgtagggaaggagggggagaaggggtgtagggaaggaggggagaaggggtgtagggaaggaggggagaaggggtgtatggaaggaggggagaagaggtgtatggaaggaggggagaagaggtgtatggggtgtagggaaggagggggagaaggggtgtagggaaggagggggagaaggggtgtagggaaggaggggagaaggggtgtagggaaggaggggagaaggggtgtATGGAAGGAGGGGAGAATAGGTGTATGGGgtgtagggaaggagggggagaaggggtgtatggggtgtagggaaggaggggagaaggggtgtagggaaggaggggagaaggggtgtATGGGGTGttgggaaggaggggagaaggggtgtATGGGTGTAGCGAAGgaggggagaaagggtgtagggaaggaggggagaaggggtgtATGGGGTGttgggaaggaggggagaaggggtgtAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1630597 lncRNA downstream 18511 16998504 ~ 17063510 (-) True G1424309
TU1630594 lncRNA downstream 85746 16996075 ~ 16996275 (-) True G1424306
TU1630534 lncRNA downstream 113666 16962664 ~ 16968355 (-) False LOC110494935
TU1630554 lncRNA downstream 180817 16900971 ~ 16901204 (-) True G1424274
TU1630501 lncRNA downstream 227473 16852521 ~ 16854548 (-) False G1424225
TU1630659 lncRNA upstream 37627 17121987 ~ 17122499 (-) True G1424351
TU1630649 lncRNA upstream 46959 17131319 ~ 17132464 (-) True G1424342
TU1630666 lncRNA upstream 48350 17132710 ~ 17133126 (-) True G1424354
TU1630663 lncRNA upstream 49524 17133884 ~ 17137231 (-) True G1424353
TU1630828 lncRNA upstream 166459 17250819 ~ 17254840 (-) True G1424474
XM_036948339.1 mRNA downstream 94247 16980733 ~ 16987774 (-) True LOC110493425
XM_036949157.1 mRNA downstream 113426 16939303 ~ 16968595 (-) False LOC110494935
XM_036949156.1 mRNA downstream 148455 16860390 ~ 16933566 (-) True LOC110495067
XM_036949152.1 mRNA downstream 245306 16821231 ~ 16836715 (-) False LOC110494924
XM_036949154.1 mRNA downstream 340489 16736500 ~ 16741532 (-) True LOC110494933
XM_036949159.1 mRNA upstream 4664 17089024 ~ 17108662 (-) False LOC110495066
XM_036949158.1 mRNA upstream 4664 17089024 ~ 17108667 (-) True LOC110495066
XM_036948342.1 mRNA upstream 57703 17142063 ~ 17146929 (-) True LOC110495065
XM_036949166.1 mRNA upstream 152901 17237261 ~ 17248546 (-) False LOC110526382
XM_036949167.1 mRNA upstream 153766 17238126 ~ 17248548 (-) True LOC110526382
TU1630535 other downstream 113666 16963630 ~ 16968355 (-) True LOC110494935
TU1630482 other downstream 143322 16855477 ~ 16938699 (-) True G1424218
TU1630504 other downstream 230535 16850751 ~ 16851486 (-) True G1424227
TU1630513 other downstream 309064 16770437 ~ 16772957 (-) True G1424234
TU1630335 other downstream 423491 16655268 ~ 16658530 (-) True LOC110508387
TU1630918 other upstream 372569 17456929 ~ 17457504 (-) True G1424547
TU1631836 other upstream 824705 17909065 ~ 17911376 (-) True G1425321
TU1631959 other upstream 1235571 18319931 ~ 18326899 (-) True G1425419
TU1631960 other upstream 1275233 18359593 ~ 18363136 (-) False LOC110487190
TU1631963 other upstream 1275233 18359593 ~ 18363136 (-) False LOC110487190

Expression Profile