RNA id: TU1632235



Basic Information


Item Value
RNA id TU1632235
length 230
lncRNA type intronic
GC content 0.41
exon number 1
gene id G1425669
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 18664375 ~ 18664604 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATGGATATTGAGTGGTTCATTCAATCAAGGTGATCAAGTGATGGCAGTTAGTGACTGATGTTCCCTGATGAAATGTTTTTTCAAGATGCAGTTTTGCATGGGTCGTATATACGTTTCTTTCATGGGTGTCTGGAGAGATGTCATTTTGGCTGAAAAGCAGAACCGATTTTAATGTCTGACTGCCTGGACATTGACAGTGGGACACTAATGGATTCTGAGTGGACTACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1632234 lncRNA downstream 786 18663371 ~ 18663589 (-) True G1425668
TU1632233 lncRNA downstream 1821 18662250 ~ 18662554 (-) True G1425667
TU1632223 lncRNA downstream 15821 18648129 ~ 18648554 (-) True G1425661
TU1632220 lncRNA downstream 24619 18639531 ~ 18639756 (-) True G1425658
TU1632219 lncRNA downstream 26398 18637684 ~ 18637977 (-) True G1425657
TU1632237 lncRNA upstream 2191 18666795 ~ 18667080 (-) True G1425671
TU1632238 lncRNA upstream 2715 18667319 ~ 18667589 (-) True G1425672
TU1632240 lncRNA upstream 3764 18668368 ~ 18668597 (-) True G1425674
TU1632241 lncRNA upstream 4920 18669524 ~ 18669818 (-) True G1425675
TU1632244 lncRNA upstream 17901 18682505 ~ 18683299 (-) True G1425678
XM_036948345.1 mRNA downstream 170255 18361725 ~ 18494120 (-) False LOC110487190
XM_036949203.1 mRNA downstream 317867 18327660 ~ 18346508 (-) True LOC110511293
XM_036949187.1 mRNA downstream 360491 18282427 ~ 18303884 (-) False LOC118936554
XM_036949189.1 mRNA downstream 361439 18282427 ~ 18302936 (-) False LOC118936554
XM_036949186.1 mRNA downstream 362068 18282427 ~ 18302307 (-) False LOC118936554
XM_036949209.1 mRNA upstream 48625 18713229 ~ 18716461 (-) False LOC110485574
XM_036949208.1 mRNA upstream 56354 18720958 ~ 18721917 (-) True LOC118940349
XM_036949219.1 mRNA upstream 284851 18949455 ~ 18980894 (-) True LOC110514184
XM_036949221.1 mRNA upstream 364474 19029078 ~ 19032029 (-) False LOC110485553
XM_021556652.2 mRNA upstream 364474 19029078 ~ 19032742 (-) True LOC110485553
TU1632214 other downstream 37334 18625756 ~ 18627041 (-) True G1425652
TU1631967 other downstream 290673 18369450 ~ 18373702 (-) True LOC110487190
TU1631960 other downstream 301239 18359593 ~ 18363136 (-) False LOC110487190
TU1631963 other downstream 301239 18359593 ~ 18363136 (-) False LOC110487190
TU1631959 other downstream 337476 18319931 ~ 18326899 (-) True G1425419
TU1632273 other upstream 48625 18713229 ~ 18716384 (-) True LOC110485574
TU1632337 other upstream 201586 18866190 ~ 18866932 (-) True G1425753
TU1632428 other upstream 389270 19053874 ~ 19061393 (-) True LOC110485549
TU1632630 other upstream 504776 19169380 ~ 19172677 (-) True G1425986
TU1633244 other upstream 1135105 19799709 ~ 19803564 (-) False G1426504

Expression Profile