RNA id: TU1632240



Basic Information


Item Value
RNA id TU1632240
length 230
lncRNA type intronic
GC content 0.42
exon number 1
gene id G1425674
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 18668368 ~ 18668597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaaaaaaaaataacagTGGATCTGGCTTCCATGTCCATATTTAAATTTGAGGGCTGTAGACTGTACCCCATGCCAGACGCAGTGGGAGTATCATTTGGGTGGAAGTGTTGGAACGAGTGACACATTTAGCCTCCTGTTATTGATGCAGAGGGATGGACTGTTCTGGTAGAAGTGTTCTGGAATCATACATTATACATAATCATCACTGTGCAAACACCATCACTGAGATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1632238 lncRNA downstream 779 18667319 ~ 18667589 (-) True G1425672
TU1632237 lncRNA downstream 1288 18666795 ~ 18667080 (-) True G1425671
TU1632235 lncRNA downstream 3764 18664375 ~ 18664604 (-) True G1425669
TU1632234 lncRNA downstream 4779 18663371 ~ 18663589 (-) True G1425668
TU1632233 lncRNA downstream 5814 18662250 ~ 18662554 (-) True G1425667
TU1632241 lncRNA upstream 927 18669524 ~ 18669818 (-) True G1425675
TU1632244 lncRNA upstream 13908 18682505 ~ 18683299 (-) True G1425678
TU1632245 lncRNA upstream 14715 18683312 ~ 18683518 (-) True G1425679
TU1632246 lncRNA upstream 15442 18684039 ~ 18684258 (-) True G1425680
TU1632270 lncRNA upstream 33322 18701919 ~ 18702488 (-) True G1425692
XM_036948345.1 mRNA downstream 174248 18361725 ~ 18494120 (-) False LOC110487190
XM_036949203.1 mRNA downstream 321860 18327660 ~ 18346508 (-) True LOC110511293
XM_036949187.1 mRNA downstream 364484 18282427 ~ 18303884 (-) False LOC118936554
XM_036949189.1 mRNA downstream 365432 18282427 ~ 18302936 (-) False LOC118936554
XM_036949186.1 mRNA downstream 366061 18282427 ~ 18302307 (-) False LOC118936554
XM_036949209.1 mRNA upstream 44632 18713229 ~ 18716461 (-) False LOC110485574
XM_036949208.1 mRNA upstream 52361 18720958 ~ 18721917 (-) True LOC118940349
XM_036949219.1 mRNA upstream 280858 18949455 ~ 18980894 (-) True LOC110514184
XM_036949221.1 mRNA upstream 360481 19029078 ~ 19032029 (-) False LOC110485553
XM_021556652.2 mRNA upstream 360481 19029078 ~ 19032742 (-) True LOC110485553
TU1632214 other downstream 41327 18625756 ~ 18627041 (-) True G1425652
TU1631967 other downstream 294666 18369450 ~ 18373702 (-) True LOC110487190
TU1631960 other downstream 305232 18359593 ~ 18363136 (-) False LOC110487190
TU1631963 other downstream 305232 18359593 ~ 18363136 (-) False LOC110487190
TU1631959 other downstream 341469 18319931 ~ 18326899 (-) True G1425419
TU1632273 other upstream 44632 18713229 ~ 18716384 (-) True LOC110485574
TU1632337 other upstream 197593 18866190 ~ 18866932 (-) True G1425753
TU1632428 other upstream 385277 19053874 ~ 19061393 (-) True LOC110485549
TU1632630 other upstream 500783 19169380 ~ 19172677 (-) True G1425986
TU1633244 other upstream 1131112 19799709 ~ 19803564 (-) False G1426504

Expression Profile