RNA id: TU1633153


Basic Information

Item Value
RNA id TU1633153
length 1041
lncRNA type intronic
GC content 0.39
exon number 2
gene id G1426437
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 19607188 ~ 19611121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAACTATAACGGGGATTACCAACGAGTGGTGGATATAACTtcaacatgtaggctctgttcattactgatagcctgttagagtggtggatataacatctacatgtaggctctgttcattactgatagcctgttagagtggtggatataacatctacatgtaggttatgttcattactgatagcctgttagagtggtggatataacttcaacatgtaggctctgttcattactgatagcctgttagagtggtggatataacatctacatgtaggctctgttcattactgatagcctgttagagtggtggatataacttcaacatgtaggctctgttcattactgatagcctattagagtggtggatataacatctacatgtaggctctgttcattactgatagcctattagagtggtggatataacatctacatgtaggctctgttcattactgatagcctattagagtggtggatataacatctacatgtaggctctgttcattactgatagcctgttagagtggtggatataacatctacaacatgtaggctctgttcattactgatagcctgttagagtggtggatataacttcaacatgtaggctctgttcattactgatagcctattagagtggtggatataacatctacatgtaggctctgttcattactgatagcctattagagtggtggatataacatctacatgtaggctctgttcattactgatagcctattagagtggtggatataacatctacatgtaggctctgttcattactgatagcctgttagagtggtggatataacatctacatgtaggctctgttcattactgatagcctgttagagtggtggatataacatctacatgtaggctctgttcattactgatagcctattagagtggtggatataacatctacatgtaggctctgttcattgctgatagcctattagagtggtggatataacctctacaacatgtaggctctgttcattactgatagcctgttagagtggtggatataacatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1633151 lncRNA downstream 167 19607188 ~ 19609639 (-) False G1426437
TU1633152 lncRNA downstream 1065 19607188 ~ 19608741 (-) False G1426437
TU1633126 lncRNA downstream 40984 19568551 ~ 19568822 (-) True G1426417
TU1632847 lncRNA downstream 91572 19518024 ~ 19518234 (-) True G1426183
TU1632842 lncRNA downstream 97474 19512130 ~ 19512332 (-) True G1426178
TU1633188 lncRNA upstream 98030 19709151 ~ 19726246 (-) True G1426468
TU1633207 lncRNA upstream 98551 19709672 ~ 19746346 (-) True G1426486
TU1633224 lncRNA upstream 135838 19746959 ~ 19747181 (-) True G1426499
TU1633226 lncRNA upstream 139190 19750311 ~ 19750521 (-) True G1426501
TU1633227 lncRNA upstream 139964 19751085 ~ 19751340 (-) True G1426502
XM_036949236.1 mRNA downstream 28779 19540854 ~ 19581027 (-) True LOC110487230
XM_036949235.1 mRNA downstream 41918 19540854 ~ 19567888 (-) False LOC110487230
XM_036949234.1 mRNA downstream 70118 19524837 ~ 19539688 (-) True LOC110485541
XM_036949233.1 mRNA downstream 71223 19524837 ~ 19538583 (-) False LOC110485541
XM_021556628.2 mRNA downstream 108389 19500224 ~ 19501417 (-) True LOC110485531
XM_036949254.1 mRNA upstream 408495 20019616 ~ 20021101 (-) False LOC110485621
LOC110487268 mRNA upstream 469133 20080254 ~ 20110329 (-) True LOC110487268
XM_036949276.1 mRNA upstream 771097 20382218 ~ 20391692 (-) True LOC110485337
XM_036949279.1 mRNA upstream 781992 20393113 ~ 20413069 (-) False keap1b
XM_036949281.1 mRNA upstream 781992 20393113 ~ 20413069 (-) False keap1b
TU1632630 other downstream 437129 19169380 ~ 19172677 (-) True G1425986
TU1632428 other downstream 548413 19053874 ~ 19061393 (-) True LOC110485549
TU1632337 other downstream 742874 18866190 ~ 18866932 (-) True G1425753
TU1632273 other downstream 893422 18713229 ~ 18716384 (-) True LOC110485574
TU1632214 other downstream 982765 18625756 ~ 18627041 (-) True G1425652
TU1633244 other upstream 188588 19799709 ~ 19803564 (-) False G1426504
TU1633235 other upstream 190707 19801828 ~ 19803564 (-) False G1426504
TU1633241 other upstream 190707 19801828 ~ 19803564 (-) False G1426504
TU1633291 other upstream 249180 19860301 ~ 19861663 (-) True G1426547
TU1633329 other upstream 408508 20019629 ~ 20021058 (-) False LOC110485621

Expression Profile