RNA id: TU1633228


Basic Information

Item Value
RNA id TU1633228
length 363
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1426503
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 19751500 ~ 19751862 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagggtagtgtgtacagcccagtacatcactggggccaagcttcctgccatccaggtctataccaggtggtgtcagaggaaggccctaaaaattgtcaaagactccagacaccctagtcatagactgttctctctgctaccgcacggcaagcggtgccggagcaccacgtctaggtccaagaggcttctaaacagcttctacccccaagccataagactcctgaacagctaatcaaatggctacccagactatttgcattgcccccctcccctcttttactctgctgctactctctgttattacctATGCAtaaccactttaataactctacctacatgtgcatattacctcgactaaccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1633227 lncRNA downstream 160 19751085 ~ 19751340 (-) True G1426502
TU1633226 lncRNA downstream 979 19750311 ~ 19750521 (-) True G1426501
TU1633224 lncRNA downstream 4319 19746959 ~ 19747181 (-) True G1426499
TU1633207 lncRNA downstream 5154 19709672 ~ 19746346 (-) True G1426486
TU1633188 lncRNA downstream 25254 19709151 ~ 19726246 (-) True G1426468
TU1633247 lncRNA upstream 2424 19754286 ~ 19755395 (-) True G1426505
TU1633246 lncRNA upstream 47775 19799637 ~ 19803564 (-) False G1426504
TU1633243 lncRNA upstream 47847 19799709 ~ 19803564 (-) False G1426504
TU1633240 lncRNA upstream 49966 19801828 ~ 19803564 (-) False G1426504
TU1633245 lncRNA upstream 49966 19801828 ~ 19803564 (-) True G1426504
XM_036949236.1 mRNA downstream 170473 19540854 ~ 19581027 (-) True LOC110487230
XM_036949235.1 mRNA downstream 183612 19540854 ~ 19567888 (-) False LOC110487230
XM_036949234.1 mRNA downstream 211812 19524837 ~ 19539688 (-) True LOC110485541
XM_036949233.1 mRNA downstream 212917 19524837 ~ 19538583 (-) False LOC110485541
XM_021556628.2 mRNA downstream 250083 19500224 ~ 19501417 (-) True LOC110485531
XM_036949254.1 mRNA upstream 267754 20019616 ~ 20021101 (-) False LOC110485621
LOC110487268 mRNA upstream 328392 20080254 ~ 20110329 (-) True LOC110487268
XM_036949276.1 mRNA upstream 630356 20382218 ~ 20391692 (-) True LOC110485337
XM_036949279.1 mRNA upstream 641251 20393113 ~ 20413069 (-) False keap1b
XM_036949281.1 mRNA upstream 641251 20393113 ~ 20413069 (-) False keap1b
TU1632630 other downstream 578823 19169380 ~ 19172677 (-) True G1425986
TU1632428 other downstream 690107 19053874 ~ 19061393 (-) True LOC110485549
TU1632337 other downstream 884568 18866190 ~ 18866932 (-) True G1425753
TU1632273 other downstream 1035116 18713229 ~ 18716384 (-) True LOC110485574
TU1632214 other downstream 1124459 18625756 ~ 18627041 (-) True G1425652
TU1633244 other upstream 47847 19799709 ~ 19803564 (-) False G1426504
TU1633235 other upstream 49966 19801828 ~ 19803564 (-) False G1426504
TU1633241 other upstream 49966 19801828 ~ 19803564 (-) False G1426504
TU1633291 other upstream 108439 19860301 ~ 19861663 (-) True G1426547
TU1633329 other upstream 267767 20019629 ~ 20021058 (-) False LOC110485621

Expression Profile