RNA id: TU1633246


Basic Information

Item Value
RNA id TU1633246
length 3560
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1426504
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 19799637 ~ 19803564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTTTGAAAATCTTGGTGTTTTATTGTAAGTATTGCATTTTCAAACTTACACAGCGagaatcatcatcatcagagAGTATGTTCTACAAAGGATTGATGGCCACAGAGTTCATCTGAACAACACTCCTATAGTCTCTcctatagcctggttaaaccagactgaatgctACGCTAACTCGTATCACAGCATTCAGCCTAGTTTAACCCAGGCTAGGTCTGTCCTGTTTGGAGGTGGGAATAGTTGTATCTACTTTTACCCATTCATTCTGCCTTAACCtggttcccagatctgtttgtgctgtcttgaccAGAATGACCACAGGAGTTggaaagacagcacaaacagatctgggtccCAGGCTATTCGTTCCCCCCCTTCGAGTCATTGTCTATAAGACCAATACCTAGTACACTGGAGTGACATTATTCAGGGTGGAGGTCAATTCCATCTAAATTCCATCTGCAAAATGGAATGTGAATTCAGTTTGGATACCAGGTAAGAAATTCCCATCTTGAACTCAACAGATTGGAACTGAGTTAGAATAGACCCCAAATCTGGATATAACAACATACTGCTAGCCATACACAGCCAAAAGCAGGTATCACTTATATGGCCGCACTAAGGACACCAGACAACACAAAAGAGAGAGGGTATTGGGGGAAAAACACAGTTTTTCATTAAATATGGGCCCTTTTTTCTCATAGTGCAGGTTCAGAAAACGACAAACAAAAAGCGCTAGAAGATAAAAGTGTAAATGAAGGAGAGTGAAGTAATCTGCCCCCTGTGAAAGAGAAGAGGACACTGTTGGTGTTCTGAGGTCGTTTGGCTTATTTGTTTCTGTCGAGAAAGCACCATCGTCAGTGAACCATCCAAATTTGAGGAGATCATGAAATCCCTCAAGATTACACTCTAACTTTACACCTTGAATGATGTCCTTCGTTGAAACCATAGGTTTTTGTTCTCAATAATATTAATCTGAGGCTTTTTGTAAATGTAAGACACATTTtgttgactaaaacataatctaGTAAAGACTACTACTTGTCTTCCTACTAGAGTGTGGCGTTAGTTAGTTAGCCCCCATTTTGTATAGTAGCTGGCTCAGTATTTGCCCATTAGACTTGGCTATTGTGAGTCCAAAATCAACCCCTTGACCCTACACCCCCATCCCCTCCTAGCAAATTCTAGGATTATTGGATAGGTGTAAACTGTTAGGACAAAAACTCCAACCAGCCTATCAGAGAAGGAGAAGATGACCATACAGCCTGGGGTCAGTTTGGAACTCGACCGTGGATGCACGAGAGGCAAGGCTCAGTACTGGGAGCAGCTTGGGGGCTGATTACATTTCAAGTGTCCGTCTAACAAAGCAACCTTAGCCTGGTATCCTGACTGACTTCACTACGATTCACCATGGCCTgtttctcaaatggcaccctattccctacttagtgctctacttttgacagagtctggtcaaaagtagtgcactatgtagggaatagggtgccatttgggaaacaacaATTGTTTCACTTTTAAACATTAAATCTTAAAATAAGGGAtaaaatcataaaaaaataggGAGAGTAATAAGATAAGACAGAAACCAAATAAGTTAACTTTTTTCCATTCTGCGTTGGTTCTGTGAGGGATGGAGAAATAGGCTAATAAATATATAAACTTCAAAAACTCAAGGGTCAGGGTGGGATTGTTCTTTCatatgaagagatatgtgaataCCCGTGGAAAACAAGACTTTTCAAAGTGCAAGTTGGGCTTCAGTAACAAGGGCTAAGGatgtacacacacagtcaatgACATCCTCATACACCTTGGTGCTGTCACTTCAGACTCGAGTTCCACCACAGCTCACGAGATACCACCAGTGGAATGCCATATAggagttttcaaaataaaagtatgaaaCAAACAAATTTGAATAAATAAGAGTGCCACACAAACTCTGTATTTATGAACAGAAGATGTCCTGGGGTGGCGGCCATTTTGTATTACAGCCATATAGTTGTTGTTCTCTTGTTGTTGTGTCTTGAACTTTAAGTTAAGTACTATGAAGTGGAACTTCTCTTGGGGTTGATGGGGGACAGCTACAGAATGGTAACCTTTGAACGTTTCAACCAGCAAAATGAACAAAGCAATACTGTCCAATTCATGCCACGTGGACGACTGACTGACCGCTTGCCAGTCACACTCTGAGAGAAGTAGAATAAATCTTTTCAAAAATATCATTTaaaatgcacaaaaacacaaggtcaaaaacAGCAACAGAGGCAATAGGTTTTTTCTATACACAAGTTTtctaacgttttttttttttacactcctTTTTTCATCGTTAATTTATTAAGCTATTTAattatgtacaaaaaaacaaagcaagTTGAAAGAGCTTTTTTTTGGACGGCCACAGGTCTGTTGCCttggaaaagagagggggaaaaaacaggaGGTCAAATGGTctaaattatttttaaataatatttttttaaatactagAAATGGTTATTGCTTGTTACTGCTGGATAGAGAGAAAGGATGGATGTTGTCTCTATAGTCCAAAGTTCCTTGCTATTCCTTCTTTTTAGATTGTGCCGATGTGTTTCTATAGACAGCTATAAGGTAGGCAGGTGCAGGATAGCTTGTTGTGGTAGCTGCGTTGTTGTAAAAACACATTTGAAGATTGATTTCCACACGGAGCACCGCCCACGTTCCATGGGAATGCATATGATCCATGTTTTTGTTTCTCCTCCATTCGTTTGGATGGAAACGTCCTGTATGACACGGCAGACAAGGATCGTTGGTTGTACAAGCGTTTGAGCTGCGTTGTGGATGGGTTTGTTGTTGCTGTTTCAGGTAGCACCATTTCAAGTGTCTGTTGGATGCAGTGCTGTGGTTGCACAGTGGTTAAAAAAACCCACAAAGACaagaaatgtaaaataaataggAACGTCGATCAAGGGCCAAAATGTGTTGATATGACAAGTAGACTTCTTGACATTCCACAGAGTCTGTGTCCAAATTACCACTTGTTCCCAAATTGGTTTTTAAGTCCAGCAGAACATTGCCTTGACCGCAGACACAAGACCAGAGCAAACACTCAAACACATAGAACCAAACAAGGTTTTAAAACTCTGAAAACTCTACAGAAAATATTCTAATATACATTAGACATGTAAGTGCATTTCTGATGCTAAAATATggggttgtttttttttgtttgattCTAAAATAACTTAATCAAttgtttgatttaaaaaaaaggggGGTCTAATTCCCTTCGATTACAGGTATGTCTGCAATAAAACCAAGATAATGCTGATCCCAGCATATAAAAATACATCCTTTTTCATCTTCAGTTTCAATCATTCATAAAACCACCCAAGTCAAAATCTAATCTCTAACCATTGCTCTTATTCAGATTCTCAAAATAAAGGTTGGTTCTGTGTTTGGATCAATCTCTGTTCTTCATGTACCCGTTATCGGGACGATACGGGGGGTTGGACCTTCTGCTTGGGATGGAGGGGGGGTTGAGGGGTTccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1633247 lncRNA downstream 44242 19754286 ~ 19755395 (-) True G1426505
TU1633228 lncRNA downstream 47775 19751500 ~ 19751862 (-) True G1426503
TU1633227 lncRNA downstream 48297 19751085 ~ 19751340 (-) True G1426502
TU1633226 lncRNA downstream 49116 19750311 ~ 19750521 (-) True G1426501
TU1633224 lncRNA downstream 52456 19746959 ~ 19747181 (-) True G1426499
TU1633271 lncRNA upstream 4102 19807666 ~ 19807926 (-) True G1426527
TU1633272 lncRNA upstream 7891 19811455 ~ 19811820 (-) True G1426528
TU1633274 lncRNA upstream 10572 19814136 ~ 19814465 (-) True G1426530
TU1633275 lncRNA upstream 12112 19815676 ~ 19815901 (-) True G1426531
TU1633287 lncRNA upstream 35795 19839359 ~ 19839585 (-) True G1426543
XM_036949236.1 mRNA downstream 218610 19540854 ~ 19581027 (-) True LOC110487230
XM_036949235.1 mRNA downstream 231749 19540854 ~ 19567888 (-) False LOC110487230
XM_036949234.1 mRNA downstream 259949 19524837 ~ 19539688 (-) True LOC110485541
XM_036949233.1 mRNA downstream 261054 19524837 ~ 19538583 (-) False LOC110485541
XM_021556628.2 mRNA downstream 298220 19500224 ~ 19501417 (-) True LOC110485531
XM_036949254.1 mRNA upstream 216052 20019616 ~ 20021101 (-) False LOC110485621
LOC110487268 mRNA upstream 276690 20080254 ~ 20110329 (-) True LOC110487268
XM_036949276.1 mRNA upstream 578654 20382218 ~ 20391692 (-) True LOC110485337
XM_036949279.1 mRNA upstream 589549 20393113 ~ 20413069 (-) False keap1b
XM_036949281.1 mRNA upstream 589549 20393113 ~ 20413069 (-) False keap1b
TU1632630 other downstream 626960 19169380 ~ 19172677 (-) True G1425986
TU1632428 other downstream 738244 19053874 ~ 19061393 (-) True LOC110485549
TU1632337 other downstream 932705 18866190 ~ 18866932 (-) True G1425753
TU1632273 other downstream 1083253 18713229 ~ 18716384 (-) True LOC110485574
TU1632214 other downstream 1172596 18625756 ~ 18627041 (-) True G1425652
TU1633291 other upstream 56737 19860301 ~ 19861663 (-) True G1426547
TU1633329 other upstream 216065 20019629 ~ 20021058 (-) False LOC110485621
TU1633378 other upstream 258116 20061680 ~ 20063618 (-) True G1426626
TU1634209 other upstream 446231 20249795 ~ 20250083 (-) True G1427350
TU1634434 other upstream 736312 20539876 ~ 20541181 (-) True LOC118940353

Expression Profile