RNA id: TU1633271


Basic Information

Item Value
RNA id TU1633271
length 261
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1426527
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 19807666 ~ 19807926 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctgtactattattctgacatttcacattcttaaaataaagtggtgatcctaactgaccgaagacaggggatttttactaggattaaatgtcaggaattgtgaataactgagtttaaatgtatttggctgaggtgtatgtagacttccgacttcaactgtatgtacatacaactaggaataaagtgacagatcgtaacagcaacagcagcagcgtatgtgacgaGTAAAAAAAGTTCCTgcaaaaaaagggtcaatgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1633246 lncRNA downstream 4102 19799637 ~ 19803564 (-) False G1426504
TU1633243 lncRNA downstream 4102 19799709 ~ 19803564 (-) False G1426504
TU1633240 lncRNA downstream 4102 19801828 ~ 19803564 (-) False G1426504
TU1633245 lncRNA downstream 4102 19801828 ~ 19803564 (-) True G1426504
TU1633247 lncRNA downstream 52271 19754286 ~ 19755395 (-) True G1426505
TU1633272 lncRNA upstream 3529 19811455 ~ 19811820 (-) True G1426528
TU1633274 lncRNA upstream 6210 19814136 ~ 19814465 (-) True G1426530
TU1633275 lncRNA upstream 7750 19815676 ~ 19815901 (-) True G1426531
TU1633287 lncRNA upstream 31433 19839359 ~ 19839585 (-) True G1426543
TU1633289 lncRNA upstream 47643 19855569 ~ 19856134 (-) True G1426545
XM_036949236.1 mRNA downstream 226639 19540854 ~ 19581027 (-) True LOC110487230
XM_036949235.1 mRNA downstream 239778 19540854 ~ 19567888 (-) False LOC110487230
XM_036949234.1 mRNA downstream 267978 19524837 ~ 19539688 (-) True LOC110485541
XM_036949233.1 mRNA downstream 269083 19524837 ~ 19538583 (-) False LOC110485541
XM_021556628.2 mRNA downstream 306249 19500224 ~ 19501417 (-) True LOC110485531
XM_036949254.1 mRNA upstream 211690 20019616 ~ 20021101 (-) False LOC110485621
LOC110487268 mRNA upstream 272328 20080254 ~ 20110329 (-) True LOC110487268
XM_036949276.1 mRNA upstream 574292 20382218 ~ 20391692 (-) True LOC110485337
XM_036949279.1 mRNA upstream 585187 20393113 ~ 20413069 (-) False keap1b
XM_036949281.1 mRNA upstream 585187 20393113 ~ 20413069 (-) False keap1b
TU1633244 other downstream 4102 19799709 ~ 19803564 (-) False G1426504
TU1633235 other downstream 4102 19801828 ~ 19803564 (-) False G1426504
TU1633241 other downstream 4102 19801828 ~ 19803564 (-) False G1426504
TU1632630 other downstream 634989 19169380 ~ 19172677 (-) True G1425986
TU1632428 other downstream 746273 19053874 ~ 19061393 (-) True LOC110485549
TU1633291 other upstream 52375 19860301 ~ 19861663 (-) True G1426547
TU1633329 other upstream 211703 20019629 ~ 20021058 (-) False LOC110485621
TU1633378 other upstream 253754 20061680 ~ 20063618 (-) True G1426626
TU1634209 other upstream 441869 20249795 ~ 20250083 (-) True G1427350
TU1634434 other upstream 731950 20539876 ~ 20541181 (-) True LOC118940353

Expression Profile