RNA id: TCONS_00047271


Basic Information

Item Value
RNA id TCONS_00047271
length 1931
lncRNA type intronic
GC content 0.28
exon number 2
gene id XLOC_023713
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 40908525 ~ 40910541 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGCTCAGGAAAGCTTTTCTCTAACAAACATTAATACACTCTGAAAAATCcacaaattgggtaaaatatatgGACAAACACAAATGTTGGGATAAATTTGGCCCTTAAATGGgtaaaaatgtctgctaaattaaaaaatatgtaaatttaacTCTAAAAAATATATCCAGCTATTGAtttgctccatattttacccaaaatttaaacaaatatcggcacaaataaatttttttcaatGCTACTATTGAAAATCAAGTAATAGTGTAAAACAATGATGTGTTGTATTAActcaatgctgggtcaaatatgaacaaatagcaATGTTGGGTAAAACTTGGTCCTTAAATGGATAAAAGTGTTTGTTAaattcataaatatgtaaatgtaattccaataaaatatttacatgtcaatattttatttaaaattaggtTGAAATGATGTTAAGAAGCAcaattatgttatttttatatatcttttcTGAAATATCTCAGTTCTTTTTAATGTTACTATTCAAAACCAAGCAATAGATGAGAGGTTGTGTCATCCCGATTTTCGGTCAAATATCAGCGAATCCAgtgttgggttaaatttggtctttaaatgaatagaagtgtctgctaaataaacaaatataatatgaAATGAAATGATGTTAATTACATTTCTAAAACATCATTATTTACACTCTTAATTCTGAaacatttcagcttttttatgttgaaaatcAAGTGATAGTTAAAAGAtgatgtgttgttttaactcaatgCTGGGTCtaatatgcacaaatacaatgttgggttaaatttggtccttaaatggataaaagtgtctgctaaattaataaatatgtaaatgtaattcCACAAAAATTTACCCAGCAATTGGTTTTGTCCATAGTTTACCTGAAATTGGGTTGAAATGATGTTACGAAGCACAAATGATGTCAACAAATCCAGTATTGggttaaatttgttttttaaatagataGACGtgtctgctaaataaataaatataaacataaatgtgAGTCAAAAATGTATCCAGTGGTAGGTTTTGTCCATTTTTTAATCCAAAATCGGgttaaaataatggataaaaacatCTGCCAAATTActaaaaataactgtaaatgtGAGTCATAAAATGTATCCAGCAGTTGGTTTTGTCCAAACTATACCCAAAGTTGCGTTGAAGTGATGTTTCAAGcatattaacactttttttttgtctgaaacatcccagaattatttttttgaaaTGTCACTATTTAAAATCAAATGATAGTTAAAAAAACAGTGTGTTGTGTTAACCAAATGcggggtcaaatatggacaaatccaatcTTGGGTTAAATTCAGTACTAAAATCGCTTTGAAAAatctgctaaataaaaaaatataaatgtaattccAAAAAAGTGCTACATATTACTCAGAATTGGGTTGAAATTATGTTAATATCATTCTTACAATAATAGCAACACTTACATAATTTACGCTTTTTTCTGAAACATCtcaaaatttaaatgttaaaggtTACTGTTCCCAAATCAAGTGTTAGTTAAATGGGTTGTGGGTTGTTATGGGTTGTATTAAGACAATGCTTGGTCAAATATGAGCAAACATAACATTTAGTTTATTTCTTAAACTAAATTgaattttaacccaactgttgggtaaGTCCATATGACAAAGCATTAGGTTAAAAAAAGCACAGTTCATGTAAAGTTACTAATGTTTGTAAAACACTGGCACAAATACATTATCTATACAACACTGTTTTTTCTGAAACATCTTAATTGCACAGTCATCTAACACAAATACTATTCAAAATCAAGTGAGAGTTAAACACACTTTAAGAATGCTGGGTTGTATTATGCACTTCtattttacttttgttattaAATGAAATTGCATTTAAACCAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047270 lncRNA downstream 33032 40873941 ~ 40875493 (-) True XLOC_023711
TCONS_00046887 lncRNA downstream 94245 40811531 ~ 40814280 (-) True XLOC_023708
TCONS_00046886 lncRNA downstream 207929 40698087 ~ 40700596 (-) True XLOC_023703
TCONS_00046885 lncRNA downstream 212125 40694007 ~ 40696400 (-) False XLOC_023703
TCONS_00046884 lncRNA downstream 245644 40662077 ~ 40662881 (-) True XLOC_023702
TCONS_00047272 lncRNA upstream 222724 41133265 ~ 41152077 (-) True XLOC_023714
TCONS_00047273 lncRNA upstream 423525 41334066 ~ 41334636 (-) True XLOC_023720
TCONS_00046888 lncRNA upstream 427765 41338306 ~ 41343046 (-) True XLOC_023721
TCONS_00046889 lncRNA upstream 496491 41407032 ~ 41414837 (-) True XLOC_023722
TCONS_00046890 lncRNA upstream 536007 41446548 ~ 41460124 (-) True XLOC_023723
TCONS_00046760 mRNA downstream 7115 40876247 ~ 40901410 (-) True XLOC_023712
TCONS_00046759 mRNA downstream 47922 40855741 ~ 40860603 (-) True XLOC_023710
TCONS_00046758 mRNA downstream 78031 40820699 ~ 40830494 (-) True XLOC_023709
TCONS_00046757 mRNA downstream 134497 40763020 ~ 40774028 (-) True XLOC_023707
TCONS_00046756 mRNA downstream 163853 40734996 ~ 40744672 (-) True XLOC_023706
TCONS_00046761 mRNA upstream 256728 41167269 ~ 41180149 (-) False XLOC_023715
TCONS_00046762 mRNA upstream 256728 41167269 ~ 41195068 (-) False XLOC_023715
TCONS_00046763 mRNA upstream 269399 41179940 ~ 41220538 (-) True XLOC_023715
TCONS_00046764 mRNA upstream 323214 41233755 ~ 41267184 (-) True XLOC_023716
TCONS_00046766 mRNA upstream 394850 41305391 ~ 41312459 (-) True XLOC_023718
TCONS_00046749 other downstream 1022740 39811071 ~ 39885785 (-) True XLOC_023700
TCONS_00046744 other downstream 1181547 39726846 ~ 39726978 (-) True XLOC_023698
TCONS_00046739 other downstream 1275262 39627620 ~ 39633263 (-) True XLOC_023693
TCONS_00046718 other downstream 2460567 38446880 ~ 38447958 (-) True XLOC_023674
TCONS_00046717 other downstream 2511037 38396572 ~ 38397488 (-) True XLOC_023673
TCONS_00046765 other upstream 344333 41254874 ~ 41254989 (-) True XLOC_023717
TCONS_00046772 other upstream 916165 41826706 ~ 41826822 (-) True XLOC_023728
TCONS_00046777 other upstream 1230843 42141384 ~ 42150116 (-) False XLOC_023736
TCONS_00046778 other upstream 1235972 42146513 ~ 42149186 (-) True XLOC_023736