RNA id: TCONS_00047280


Basic Information

Item Value
RNA id TCONS_00047280
length 1413
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_023737
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 42168014 ~ 42170743 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AtgacgacgagatctaaagcaacagctagatgaagacgactagatgacgatgagatctaaagcaacagctagatgaagacgactagATGACAACGAGATCTAACAACAGCTAAATGAggacgacgagatctaaagcaacagctagatgaagacgactagatgacgatgagatctaaCAGCTAAATGAGACTagatgacgatgagatctaaaACAACAGCTAGATGACGACGACGATGACGACaactaaagcaacagctagatgataacgacgagatctaaagcaacagctagatcaAGACGACTagatgacgatgagatctaaaACAGCTAGAAGACGACGGCTAAatgacgatgagatctaaagcaacaccTAGATGAATACGACAGCTAGATGACAACAACCTTTAAAACCACGGCTAGATGATAACACCTACATGACATCTAAAAACCCTAAAAGACATCTAAAACAACGCCTAGATGTCAATGCCTAGAAGATGACAATGAAACCTAGGCATTGTTTCATGTCTTCTAGATGACGATGATGCCCAAGAGGACAACAACACCTAGATTCCATCTAAACACAACCTAAAAGATGACAGCCTAAAAATACACATCTACATGATGACATCTAAAACAGCAACAACATCTATAAGATACAATGCCTAGAAGACAGAACATTACCTGGAAGACAATGACATTTACAACTCAACACCTAGAACTTGACAACGCTATTAAGACCACACCTAGAACTAGAGAACAGCTAGAACTAAATACCTGGAGAAATGTAGTAGAGTGTATGCAGTGTTGGTGAACAATGTGCTGTTGTGTGGAGGTGCTAATCACCAGTAGAAGATTGGGCATCATTTAAGGCCTGTTCGCCCCAGGCCACCGTCCCTGCGTGCTGTCCAAGTGGACCCAGGGGGGCTGAATACTTACCACTCCCCCAAGTGACCTTTTGTTAACACCGCAAGGTTTCCCAGGTCACCCGAGAAGAGTCTGCAGAAATCTCTATGGGGCCTACTCTGTCTAATGCAGAGACTGCTCCCAAGAACCCCAGATTTCTCCAGGGTAAATGAGAACCCTTGCCCAAATCAGCTGAATCCCACAAGTGGTCTCAGGTAAAAGAGTTGGCCACAAACCATTCGATGCCACCTCCTCTACCATTGCTGATTTACTCTAAAATACTTCTGGTCAACATCTAGGAAGTTCAAAGAAAATTCCCAAATGTGATCAGAGGCATCAAGAGAATGAGTCCTGACACTCCATGCCTGCAAGTGTCAGATCGAGGATCAAACTGGCGGTTACATTCCAGAAAATGTAACAAGCTTCTACCAGCTTTTGCCTCTAGGGATAATGCAAGAACCAAACCGACATCATCCTCATAGAGAACAACCGTTGGGAGCATTAACCCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047278 lncRNA downstream 26874 42135051 ~ 42141140 (-) True XLOC_023735
TCONS_00047277 lncRNA downstream 73936 42091209 ~ 42094078 (-) True XLOC_023733
TCONS_00047275 lncRNA downstream 229237 41937199 ~ 41938777 (-) False XLOC_023730
TCONS_00047276 lncRNA downstream 229249 41937971 ~ 41938765 (-) True XLOC_023730
TCONS_00047274 lncRNA downstream 240847 41923786 ~ 41927167 (-) True XLOC_023729
TCONS_00047281 lncRNA upstream 283 42171026 ~ 42172917 (-) False XLOC_023738
TCONS_00047282 lncRNA upstream 283 42171026 ~ 42172918 (-) True XLOC_023738
TCONS_00046776 mRNA downstream 19675 42141313 ~ 42148339 (-) False XLOC_023736
TCONS_00046775 mRNA downstream 59359 42102204 ~ 42108655 (-) True XLOC_023734
TCONS_00046774 mRNA downstream 77379 42081728 ~ 42090635 (-) True XLOC_023732
TCONS_00046773 mRNA downstream 95128 42060967 ~ 42072886 (-) True XLOC_023731
TCONS_00046771 mRNA downstream 370333 41786274 ~ 41797681 (-) True XLOC_023727
TCONS_00046777 other downstream 17898 42141384 ~ 42150116 (-) False XLOC_023736
TCONS_00046778 other downstream 18828 42146513 ~ 42149186 (-) True XLOC_023736
TCONS_00046772 other downstream 341192 41826706 ~ 41826822 (-) True XLOC_023728
TCONS_00046765 other downstream 913025 41254874 ~ 41254989 (-) True XLOC_023717
TCONS_00046749 other downstream 2282229 39811071 ~ 39885785 (-) True XLOC_023700

Expression Profile

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