RNA id: TU1643452


Basic Information

Item Value
RNA id TU1643452
length 284
RNA type TUCP
GC content 0.54
exon number 1
gene id G1435467
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28547273 ~ 28547556 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatactGGTgctgttggccctgggttcctcctaatgcaagacaatgctagacctcatgtggctggagtgtgtcagcagttcctgcaagaggaaggcattgctgctatggactggcccgcctgttccccagacctgaatccaattgagcacatctgggacatcatgtctcgctccatccaccaacgccacgttgcaccacagactgtccaggagttggcggatgcttttgtccaggtctgggaggagatccctaaGGATCTCATcaggaatacagtgccttgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1643443 lncRNA downstream 6490 28540564 ~ 28540783 (-) True G1435458
TU1643364 lncRNA downstream 20207 28522740 ~ 28527066 (-) True G1435385
TU1643428 lncRNA downstream 29300 28517699 ~ 28517973 (-) True G1435445
TU1643416 lncRNA downstream 42450 28504304 ~ 28504823 (-) True G1435434
TU1643415 lncRNA downstream 43043 28503697 ~ 28504230 (-) True G1435433
TU1643896 lncRNA upstream 23925 28571481 ~ 28571806 (-) True G1435865
TU1643900 lncRNA upstream 26281 28573837 ~ 28575219 (-) True G1435867
TU1643902 lncRNA upstream 30897 28578453 ~ 28578685 (-) True G1435869
TU1643943 lncRNA upstream 126918 28674474 ~ 28688486 (-) True G1435905
TU1643941 lncRNA upstream 141415 28688971 ~ 28754020 (-) True G1435903
LOC110495129 mRNA downstream 25988 28496785 ~ 28521285 (-) False LOC110495129
XM_036949614.1 mRNA downstream 150038 28394623 ~ 28397235 (-) True LOC110493625
XM_036949612.1 mRNA downstream 157540 28387136 ~ 28389733 (-) True LOC118936556
XM_036949613.1 mRNA downstream 178253 28366452 ~ 28369020 (-) False LOC110495156
XM_021570485.2 mRNA downstream 179967 28366452 ~ 28367306 (-) False LOC110495156
XM_021568007.2 mRNA upstream 7998 28555554 ~ 28560692 (-) True LOC110493627
XM_021568009.2 mRNA upstream 62829 28610385 ~ 28622231 (-) True LOC110493630
NM_001281396.1 mRNA upstream 76684 28624240 ~ 28626947 (-) True LOC101268960
XM_021568016.2 mRNA upstream 89456 28637012 ~ 28645298 (-) False LOC110493634
XM_021568017.2 mRNA upstream 89456 28637012 ~ 28645298 (-) False LOC110493634
TU1643280 other downstream 180032 28366454 ~ 28367241 (-) True LOC110495156
TU1643279 other downstream 218396 28328130 ~ 28328877 (-) True LOC110493621
TU1643142 other downstream 346591 28189019 ~ 28200682 (-) True G1435199
TU1643202 other downstream 364712 28181042 ~ 28182561 (-) True G1435257
TU1643092 other downstream 499272 28044275 ~ 28048001 (-) False LOC110495123
TU1644814 other upstream 1064696 29612252 ~ 29612608 (-) True G1436694
TU1645492 other upstream 1390770 29938326 ~ 29943730 (-) True LOC110495137
TU1645583 other upstream 1503046 30050602 ~ 30114123 (-) True G1437411
TU1645686 other upstream 1693894 30241450 ~ 30242963 (-) False G1437507
TU1645805 other upstream 1919767 30467323 ~ 30468772 (-) True G1437609

Expression Profile