RNA id: TU1644121


Basic Information

Item Value
RNA id TU1644121
length 251
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1436041
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28927764 ~ 28928014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcacaacaaacaaaaaaacagttATGCATGTCAAACACGAGACCTAACGCAGTGAAAAGTCCCCCGTACATTACCGATAGAGTACAGTTACAGATAACAGTAAGAATACACAAGGGCATGAAATCAGCAGAAGGAAAGGCAGGTTGACTTGCTCAGTGTAGATTTATTTACTGGTCTTGGTGATCCAATGACGAAAGCAAAATatcattaagcaataaggcccgagggcgtgtggtatatggccaatatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1644077 lncRNA downstream 66188 28859962 ~ 28861576 (-) True LOC110493648
TU1643979 lncRNA downstream 153125 28704255 ~ 28774639 (-) True G1435933
TU1643941 lncRNA downstream 173744 28688971 ~ 28754020 (-) True G1435903
TU1643981 lncRNA downstream 218343 28708473 ~ 28709421 (-) True G1435935
TU1643943 lncRNA downstream 239278 28674474 ~ 28688486 (-) True G1435905
TU1644095 lncRNA upstream 8683 28936697 ~ 28939917 (-) False vig-2
TU1644096 lncRNA upstream 8683 28936697 ~ 28939917 (-) True vig-2
TU1644137 lncRNA upstream 29325 28957339 ~ 28957786 (-) True G1436056
TU1644185 lncRNA upstream 131355 29059369 ~ 29059568 (-) True G1436104
TU1644186 lncRNA upstream 132097 29060111 ~ 29060311 (-) True G1436105
XM_036949636.1 mRNA downstream 5188 28898537 ~ 28922576 (-) True LOC110493647
XM_021568037.2 mRNA downstream 41153 28859182 ~ 28886611 (-) False LOC110493648
XM_021568038.2 mRNA downstream 41153 28859182 ~ 28886611 (-) False LOC110493648
XM_021568045.2 mRNA downstream 79260 28845881 ~ 28848504 (-) True LOC110493650
XM_021568044.2 mRNA downstream 79266 28845881 ~ 28848498 (-) False LOC110493650
NM_001124285.1 mRNA upstream 8657 28936671 ~ 28939859 (-) False vig-2
XM_036947880.1 mRNA upstream 8675 28936689 ~ 28939970 (-) False vig-2
XM_021568046.2 mRNA upstream 43090 28971104 ~ 28981732 (-) False LOC110493651
XM_036949645.1 mRNA upstream 43090 28971104 ~ 28986924 (-) False LOC110493651
XM_036949647.1 mRNA upstream 43090 28971104 ~ 28987438 (-) False LOC110493651
TU1643452 other downstream 380208 28547273 ~ 28547556 (-) True G1435467
TU1643280 other downstream 560523 28366454 ~ 28367241 (-) True LOC110495156
TU1643279 other downstream 598887 28328130 ~ 28328877 (-) True LOC110493621
TU1643142 other downstream 727082 28189019 ~ 28200682 (-) True G1435199
TU1643202 other downstream 745203 28181042 ~ 28182561 (-) True G1435257
TU1644814 other upstream 684238 29612252 ~ 29612608 (-) True G1436694
TU1645492 other upstream 1010312 29938326 ~ 29943730 (-) True LOC110495137
TU1645583 other upstream 1122588 30050602 ~ 30114123 (-) True G1437411
TU1645686 other upstream 1313436 30241450 ~ 30242963 (-) False G1437507
TU1645805 other upstream 1539309 30467323 ~ 30468772 (-) True G1437609

Expression Profile