RNA id: TU1648691


Basic Information

Item Value
RNA id TU1648691
length 1880
lncRNA type antisense_over
GC content 0.47
exon number 5
gene id G1440191
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 33011002 ~ 33016863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCATGTTCCTGACTTGTTCTGGACGCAACTCTCGGATGGGACCGAGGGACGCATCTTTGGCCAGCGAGGTCAGGTCACTGCCAGAGTAGCCTTCTGTCATTCTGGCAAGCTGGGACAGTTCTTTCTGTGTGAGAGGATTCCCGTGCTTCCCTAAAAGGTTCTTGACCAGTTTTAGCCGGGTGTCTTCTGTTGGTAAAGCCACGTACACCCGTTTTGCAAATCGCCTAAGAACAGCCTCGTCCAGCTCCTGAGGCCTGTTGGTGGCTCCCATCACCAACACCCGTTCATCCCCACCAGATTGCACCTAAACACACACCCAAATAAATATTATTGGCAGCTACACAGTTGCctatggaaagtattcagacctcttgacttttccacattttgttacattacagccttattctaaaattgattaaatagttttatccccaataccccataatgacaacaacaacaaaaaatgaaataaaattaaatatcactatcaagtattcagaccatatactcagtactttgttgaagcacctttggcagcgatttcagcATCAAGTCTTcgtgggtatgatgctacaagcttagcacacctgtacttggggagtttctcccattcttctctgcagatcctctcaagctctgtcaggatggatggggagcgtctttgcacagctattttctggtctatccagagatgttcgattgggttcatggctctggctggggcactcaaggacattcagagacttgtcctaaagtcactcctgcgttgtctaggctgtgtgcctagggttattgtcctgttagaaggtgaaccttcgccccaggtcctgagtgctctggagcaggttttcatcaaggatctctttgtactttgctcagttcatctttgcctcgatcctgactagtctcccggtccctgccgctgaaaaacatccccacagcctgatgctgctacccccatgcttcaccgtagggatggtgccatgtttcctccagacattcaggccaaagagttcaatattggtttcatcagactaaagcatcttgttcctcatggtctcagagtctttaggtgccttttggcaaacgccaagcgggctgtcatgtgccttttacagaggagtggcttctgtctggccacactaccacaaaggcctttttggtggagtgctgcagagatggctgtccttctgatagtttctcccatctccccagaggaactCTAGACCTCTCTAGtgacctctctgaccaaggcccttctcccccaatttctcagtttggccggggcggccagctctaggaagagttggccgcccggtggttccaaacttcttccatttaagaatgatggaggccactgtgttcgtggggaccttcaatgctgcagaaatgttttggtacccttccccagagctgtgcctcaacacaatcctgtctcggagcattgacaaacaattcctttgacctcatggcctgcttttttctctgacatgcactaacaactgtgggaccttatatagacagttgtgtgcctttccaaataatgtccaatcaattgaatttaccacaggtggactctaactgactaggtttccccctttccctttatcaagttatagaaacatcaaggatgatcaatgaaaacaggatgcacctaagctcaatttcgagtctcatagcaaagggttcgAATAcctctgtaaataaggtattgtgtgtagattgctgaggaatttgttttatttattctaaaatggtttaaggctgaaacgtaacaaaatgtggaaaaagtcaaggggtctgaatactttccgaagacacgGCATCTCTTGGACAGATTTAATGTGGAAGAGGCCAAATAATTATGCAGGATatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1648668 lncRNA upstream 42826 32967976 ~ 32968176 (+) True G1440168
TU1648654 lncRNA upstream 71242 32939343 ~ 32939760 (+) True G1440155
TU1648637 lncRNA upstream 72240 32900576 ~ 32938762 (+) True G1440138
TU1648601 lncRNA upstream 173490 32836650 ~ 32837512 (+) True G1440105
TU1648598 lncRNA upstream 176866 32833820 ~ 32834136 (+) True G1440102
TU1648702 lncRNA downstream 7892 33024755 ~ 33057441 (+) True G1440200
TU1648726 lncRNA downstream 52363 33069226 ~ 33069456 (+) True G1440223
TU1648737 lncRNA downstream 72277 33089140 ~ 33090626 (+) True G1440234
TU1648781 lncRNA downstream 146010 33162873 ~ 33163131 (+) True G1440278
TU1649056 lncRNA downstream 155353 33172216 ~ 33172560 (+) True G1440531
NM_001124369.1 mRNA upstream 22988 32986676 ~ 32988014 (+) True iip2
XM_021568213.2 mRNA upstream 26098 32974838 ~ 32984904 (+) True LOC110493756
XM_021568210.2 mRNA upstream 77819 32846220 ~ 32933183 (+) False strn
XM_021568212.2 mRNA upstream 77819 32846220 ~ 32933183 (+) False strn
XM_021568211.2 mRNA upstream 77819 32846221 ~ 32933183 (+) True strn
XM_021568219.2 mRNA downstream 19135 33035998 ~ 33037711 (+) False LOC110493759
XM_036949749.1 mRNA downstream 19331 33036194 ~ 33037993 (+) True LOC110493759
XM_021568220.2 mRNA downstream 52893 33069756 ~ 33076669 (+) True LOC110493760
XM_021568225.2 mRNA downstream 227113 33243976 ~ 33245965 (+) False LOC110493762
XM_021568224.2 mRNA downstream 227114 33243977 ~ 33245965 (+) False LOC110493762
TU1648662 other upstream 54945 32951800 ~ 32956057 (+) True G1440162
TU1648562 other upstream 213570 32797098 ~ 32797432 (+) True G1440066
TU1648454 other upstream 244295 32712860 ~ 32766707 (+) True G1439962
TU1648185 other upstream 400661 32600236 ~ 32610341 (+) True rbm34
TU1647841 other upstream 632694 32373615 ~ 32378308 (+) True ero1b
TU1649436 other downstream 507336 33524199 ~ 33524534 (+) True G1440890
TU1649941 other downstream 959330 33976193 ~ 33976475 (+) True G1441315
TU1650503 other downstream 1273178 34290041 ~ 34295329 (+) False LOC110493778
TU1650494 other downstream 1284624 34301487 ~ 34302609 (+) False LOC110493778
TU1651374 other downstream 2152035 35168898 ~ 35184540 (+) False LOC110493802

Expression Profile