RNA id: TU1650315



Basic Information


Item Value
RNA id TU1650315
length 341
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1441652
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34228375 ~ 34228715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggactttatactgtcccaaaactttttgcagttagagctacaggatgcacatttctgtttgaaaaggctAGCCTTTGTTTTTTTTTgattgactgtgtgtattggttcctgacttccctgaacagttgcatattgcggggactatttgatgctattgcagtctgccacaggatgtttttgtgctggtcgagggcagtcaggtctggagtgaaccaagggctatatctgttcttagttctacattttttttaaaggggcatgcgtatttaagatggtgaggaaattacttttaaagaacgaccaggcatcctcgactgacgggatgaggtcagtatccttcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1650304 lncRNA upstream 11162 34216908 ~ 34217213 (+) True G1441641
TU1650240 lncRNA upstream 14270 34143637 ~ 34214105 (+) True G1441578
TU1650244 lncRNA upstream 87108 34139960 ~ 34141267 (+) True G1441582
TU1650257 lncRNA upstream 89795 34138126 ~ 34138580 (+) True G1441595
TU1650243 lncRNA upstream 91580 34136504 ~ 34136795 (+) True G1441581
TU1650278 lncRNA downstream 2732 34231447 ~ 34232091 (+) True LOC110493775
TU1650277 lncRNA downstream 6483 34235198 ~ 34237791 (+) True G1441614
TU1650430 lncRNA downstream 13224 34241939 ~ 34254653 (+) True LOC110493777
TU1650507 lncRNA downstream 72772 34301487 ~ 34303980 (+) False LOC110493778
TU1650509 lncRNA downstream 85916 34314631 ~ 34317656 (+) False LOC110493778
XM_021568245.2 mRNA upstream 95752 34129926 ~ 34132623 (+) True LOC110493772
XM_036949758.1 mRNA upstream 107152 34040262 ~ 34121223 (+) False LOC110493770
XR_002469191.2 mRNA downstream 13198 34241913 ~ 34254092 (+) False LOC110493777
XR_005036965.1 mRNA downstream 14514 34243229 ~ 34254092 (+) False LOC110493777
XM_036949768.1 mRNA downstream 61302 34290017 ~ 34317682 (+) False LOC110493778
XM_036949769.1 mRNA downstream 61306 34290021 ~ 34317682 (+) False LOC110493778
XM_021568261.2 mRNA downstream 202172 34430887 ~ 34443032 (+) False LOC110493783
TU1649941 other upstream 251900 33976193 ~ 33976475 (+) True G1441315
TU1649436 other upstream 703841 33524199 ~ 33524534 (+) True G1440890
TU1648662 other upstream 1272318 32951800 ~ 32956057 (+) True G1440162
TU1648562 other upstream 1430943 32797098 ~ 32797432 (+) True G1440066
TU1648454 other upstream 1461668 32712860 ~ 32766707 (+) True G1439962
TU1650503 other downstream 61326 34290041 ~ 34295329 (+) False LOC110493778
TU1650494 other downstream 72772 34301487 ~ 34302609 (+) False LOC110493778
TU1651374 other downstream 940183 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other downstream 940183 35168898 ~ 35184540 (+) True LOC110493802
TU1652084 other downstream 1445249 35673964 ~ 35744642 (+) True G1443221

Expression Profile