RNA id: TU1650711


Basic Information

Item Value
RNA id TU1650711
length 333
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1441989
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34562355 ~ 34562687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatCACACGCCTATCTTGTCAATATGATACACATTCTTTAATCCAACCGGAGAACAACTTtcccctctcattgaagccatGGAAGTTCACGGCCAACTGTGGTACTGTTAGCAGAAAACAGAATCCCCCATTATAGTAAATAGAAAAATGGCAATCTTTCTGTAAATTTTTTTTTCATGGTAACAATAATTGTTTCAAATAAACCAGGTGTATGTCCTTCAACCGAGTATtttaaaatcacacacagaataaGTTATAAAGCTAATATAAACCCATTTGGCCTTCAACTTGAGTTACTCAAtgaaaaatatacagtgccttgcgaaagtattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1650655 lncRNA upstream 1918 34555617 ~ 34560437 (+) False slc8a1a
TU1650662 lncRNA upstream 1918 34555617 ~ 34560437 (+) False slc8a1a
TU1650657 lncRNA upstream 1918 34555684 ~ 34560437 (+) True slc8a1a
TU1650637 lncRNA upstream 104632 34453923 ~ 34457723 (+) True G1441929
TU1650607 lncRNA upstream 146096 34415631 ~ 34416259 (+) True G1441906
TU1650712 lncRNA downstream 5799 34568486 ~ 34569276 (+) True G1441990
TU1650717 lncRNA downstream 26675 34589362 ~ 34590022 (+) True G1441995
TU1650728 lncRNA downstream 44166 34606853 ~ 34607089 (+) True G1442004
TU1650729 lncRNA downstream 44768 34607455 ~ 34607674 (+) True G1442005
TU1650771 lncRNA downstream 159611 34722298 ~ 34722511 (+) True G1442041
XM_021568266.2 mRNA upstream 4031 34510607 ~ 34558324 (+) False slc8a1a
XM_021568269.2 mRNA upstream 4031 34510607 ~ 34558324 (+) False slc8a1a
XM_036949771.1 mRNA upstream 4031 34510607 ~ 34558324 (+) False slc8a1a
XM_036949772.1 mRNA upstream 4031 34510607 ~ 34558324 (+) False slc8a1a
XM_021568267.2 mRNA upstream 4031 34517455 ~ 34558324 (+) False slc8a1a
XM_021568271.2 mRNA downstream 18294 34580981 ~ 34583315 (+) True LOC110493788
XM_036949775.1 mRNA downstream 47126 34609813 ~ 34694633 (+) False map4k3a
XM_036949774.1 mRNA downstream 47127 34609814 ~ 34694633 (+) True map4k3a
XM_036949776.1 mRNA downstream 132710 34695397 ~ 34769825 (+) False LOC110493792
XM_036949777.1 mRNA downstream 132710 34695397 ~ 34769825 (+) False LOC110493792
TU1650494 other upstream 259746 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 267026 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 585880 33976193 ~ 33976475 (+) True G1441315
TU1649436 other upstream 1037821 33524199 ~ 33524534 (+) True G1440890
TU1648662 other upstream 1606298 32951800 ~ 32956057 (+) True G1440162
TU1651374 other downstream 606211 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other downstream 606211 35168898 ~ 35184540 (+) True LOC110493802
TU1652084 other downstream 1111277 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 1184185 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 1676257 36238944 ~ 36240725 (+) False LOC118940407

Expression Profile