RNA id: TU1650729


Basic Information

Item Value
RNA id TU1650729
length 220
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1442005
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34607455 ~ 34607674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATTGTCTTGTTGAATACATTTGTTTGTGCTGTGCATTCCTATTTTCAGATTAGTATAGGCCTAGGGAGTAGGGACAGATCCATCTAGTGACACCTGTTTTTCTCTGGAGGATATTACACAAAGGCAGGACATAAAGggaaattcaaaatcaaatcaaattgatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1650728 lncRNA upstream 366 34606853 ~ 34607089 (+) True G1442004
TU1650717 lncRNA upstream 17433 34589362 ~ 34590022 (+) True G1441995
TU1650712 lncRNA upstream 38179 34568486 ~ 34569276 (+) True G1441990
TU1650711 lncRNA upstream 44768 34562355 ~ 34562687 (+) True G1441989
TU1650662 lncRNA upstream 47018 34555617 ~ 34560437 (+) False slc8a1a
TU1650771 lncRNA downstream 114624 34722298 ~ 34722511 (+) True G1442041
TU1650759 lncRNA downstream 159351 34767025 ~ 34768225 (+) True LOC110493792
TU1650816 lncRNA downstream 234900 34842574 ~ 34842788 (+) True G1442086
TU1650818 lncRNA downstream 289670 34897344 ~ 34903155 (+) True LOC110493796
TU1651214 lncRNA downstream 299575 34907249 ~ 34907477 (+) True G1442446
XM_021568271.2 mRNA upstream 24140 34580981 ~ 34583315 (+) True LOC110493788
XM_021568269.2 mRNA upstream 49131 34510607 ~ 34558324 (+) False slc8a1a
XM_036949775.1 mRNA downstream 2139 34609813 ~ 34694633 (+) False map4k3a
XM_036949774.1 mRNA downstream 2140 34609814 ~ 34694633 (+) True map4k3a
XM_036949776.1 mRNA downstream 87723 34695397 ~ 34769825 (+) False LOC110493792
XM_036949777.1 mRNA downstream 87723 34695397 ~ 34769825 (+) False LOC110493792
XM_036949778.1 mRNA downstream 87723 34695397 ~ 34769825 (+) False LOC110493792
TU1650494 other upstream 304846 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 312126 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 630980 33976193 ~ 33976475 (+) True G1441315
TU1649436 other upstream 1082921 33524199 ~ 33524534 (+) True G1440890
TU1648662 other upstream 1651398 32951800 ~ 32956057 (+) True G1440162
TU1651374 other downstream 561224 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other downstream 561224 35168898 ~ 35184540 (+) True LOC110493802
TU1652084 other downstream 1066290 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 1139198 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 1631270 36238944 ~ 36240725 (+) False LOC118940407

Expression Profile