RNA id: TU1651685


Basic Information

Item Value
RNA id TU1651685
length 214
lncRNA type intronic
GC content 0.51
exon number 1
gene id G1442855
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35280070 ~ 35280283 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAAGGAAAAATAATGACTAGGTGATTGGGGTTGCAAACAGTCTGAGCTAACTCCCGGATTTTCTCCATAATAGCCTTTAACCTACGGTGGTGGCGTTCCGTCAAAGAACTGAGCCCTTCCAAAAGGCCCCGTAGCAACTCCTGATGTctcccaatggtggctccctgcagggagacagcttggcagagctggtccaagtctgctgggtctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1651682 lncRNA upstream 1909 35277886 ~ 35278161 (+) True G1442852
TU1651634 lncRNA upstream 27835 35250051 ~ 35252235 (+) True dzank1
TU1651628 lncRNA upstream 41168 35238129 ~ 35238902 (+) False dzank1
TU1651429 lncRNA upstream 62229 35217312 ~ 35217841 (+) True G1442640
TU1651380 lncRNA upstream 95530 35120694 ~ 35184540 (+) False LOC110493802
TU1651903 lncRNA downstream 152471 35432754 ~ 35432986 (+) True G1443054
TU1651906 lncRNA downstream 156706 35436989 ~ 35437368 (+) True G1443057
TU1651924 lncRNA downstream 165307 35445590 ~ 35447094 (+) True G1443074
TU1651951 lncRNA downstream 237483 35517766 ~ 35520282 (+) False G1443097
TU1651950 lncRNA downstream 239335 35519618 ~ 35520282 (+) True G1443097
XR_005036966.1 mRNA upstream 13760 35264195 ~ 35266310 (+) True LOC118940403
XM_021568303.2 mRNA upstream 27617 35238896 ~ 35252453 (+) False dzank1
XM_021568304.2 mRNA upstream 27617 35238896 ~ 35252453 (+) False dzank1
XM_021568305.2 mRNA upstream 27617 35238896 ~ 35252453 (+) False dzank1
NM_001165246.1 mRNA upstream 47925 35228803 ~ 35232145 (+) True rbbp9
XM_036949792.1 mRNA downstream 1542 35281825 ~ 35311816 (+) False rrbp1b
XM_021568310.2 mRNA downstream 1544 35281827 ~ 35311816 (+) False rrbp1b
XM_036949790.1 mRNA downstream 1545 35281828 ~ 35311816 (+) False rrbp1b
XM_021568309.2 mRNA downstream 5096 35285379 ~ 35311816 (+) True rrbp1b
XM_036949795.1 mRNA downstream 88603 35368886 ~ 35392355 (+) False LOC110493172
TU1651374 other upstream 95530 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 95530 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 977461 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 984741 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 1303595 33976193 ~ 33976475 (+) True G1441315
TU1652084 other downstream 393681 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 466589 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 958661 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 1050952 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 1212094 36492377 ~ 36529730 (+) False LOC110493174

Expression Profile