RNA id: TU1652227


Basic Information

Item Value
RNA id TU1652227
length 205
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1443347
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35958609 ~ 35958813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattagagagagcatacttaaattcacacaggacaccggataagacaggagaaatactccagatataacagactgaccctagccccccgacacaaactactgcagcataaatactggaggctgagacgggaggggtcaggagacactgtggccccatccgatgatacccccggacagggccaaacagacaggatataaccccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1652226 lncRNA upstream 64 35958255 ~ 35958545 (+) True G1443346
TU1652126 lncRNA upstream 721 35957566 ~ 35957888 (+) True G1443247
TU1652059 lncRNA upstream 319165 35638494 ~ 35639444 (+) True G1443197
TU1652060 lncRNA upstream 321878 35633485 ~ 35636731 (+) True G1443198
TU1652049 lncRNA upstream 336154 35622015 ~ 35622455 (+) True G1443187
TU1652229 lncRNA downstream 3398 35962211 ~ 35962441 (+) True G1443349
TU1652232 lncRNA downstream 10777 35969590 ~ 35969957 (+) True G1443352
TU1652233 lncRNA downstream 12104 35970917 ~ 35971209 (+) True G1443353
TU1652236 lncRNA downstream 15730 35974543 ~ 35974768 (+) True G1443356
TU1652237 lncRNA downstream 16772 35975585 ~ 35975806 (+) True G1443357
XM_021568328.2 mRNA upstream 2962 35855110 ~ 35955647 (+) False LOC110493827
XM_021568329.2 mRNA upstream 2962 35855110 ~ 35955647 (+) False LOC110493827
XM_021568331.2 mRNA upstream 2962 35855110 ~ 35955647 (+) False LOC110493827
XM_036949803.1 mRNA upstream 2962 35855130 ~ 35955647 (+) True LOC110493827
XM_021568326.2 mRNA upstream 111152 35838159 ~ 35847457 (+) True LOC110493823
XM_036949824.1 mRNA downstream 275479 36234292 ~ 36242517 (+) False LOC118940407
XM_036949826.1 mRNA downstream 275479 36234292 ~ 36242517 (+) False LOC118940407
XM_036949825.1 mRNA downstream 280525 36239338 ~ 36242305 (+) False LOC118940407
XM_021568352.2 mRNA downstream 451390 36410203 ~ 36417254 (+) True LOC110493841
XM_036949841.1 mRNA downstream 533469 36492282 ~ 36541078 (+) False LOC110493174
TU1652130 other upstream 206819 35746872 ~ 35751790 (+) True G1443251
TU1652084 other upstream 213967 35673964 ~ 35744642 (+) True G1443221
TU1651374 other upstream 774069 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 774069 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 1656000 34301487 ~ 34302609 (+) False LOC110493778
TU1652322 other downstream 280131 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 372422 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 533564 36492377 ~ 36529730 (+) False LOC110493174
TU1652965 other downstream 584206 36543019 ~ 36557771 (+) True LOC110493174
TU1653174 other downstream 898753 36857566 ~ 36861009 (+) True G1444198

Expression Profile