RNA id: TU1652236


Basic Information

Item Value
RNA id TU1652236
length 226
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1443356
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35974543 ~ 35974768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatgtaacctcctgttccgacgatgtgaggacgacggtccatacgttaaaaggactaacatgtcaactacagaactaagccaacctcagcgtgagctttggttgcgaatggtatgaactttgaactcttattcactacagaagtggtACCTCAttgccgttgagttagcaacagcagctgcaaacgtgggctaggaaagaacagacagagtatcccgtctaccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1652233 lncRNA upstream 3334 35970917 ~ 35971209 (+) True G1443353
TU1652232 lncRNA upstream 4586 35969590 ~ 35969957 (+) True G1443352
TU1652229 lncRNA upstream 12102 35962211 ~ 35962441 (+) True G1443349
TU1652227 lncRNA upstream 15730 35958609 ~ 35958813 (+) True G1443347
TU1652226 lncRNA upstream 15998 35958255 ~ 35958545 (+) True G1443346
TU1652237 lncRNA downstream 817 35975585 ~ 35975806 (+) True G1443357
TU1652238 lncRNA downstream 5238 35980006 ~ 36019231 (+) True G1443358
TU1652241 lncRNA downstream 7539 35982307 ~ 36019453 (+) True G1443361
TU1652250 lncRNA downstream 16382 35991150 ~ 36030653 (+) False G1443369
TU1652251 lncRNA downstream 16382 35991150 ~ 35994567 (+) True G1443369
XM_021568328.2 mRNA upstream 18896 35855110 ~ 35955647 (+) False LOC110493827
XM_021568329.2 mRNA upstream 18896 35855110 ~ 35955647 (+) False LOC110493827
XM_021568331.2 mRNA upstream 18896 35855110 ~ 35955647 (+) False LOC110493827
XM_036949803.1 mRNA upstream 18896 35855130 ~ 35955647 (+) True LOC110493827
XM_021568326.2 mRNA upstream 127086 35838159 ~ 35847457 (+) True LOC110493823
XM_036949824.1 mRNA downstream 259524 36234292 ~ 36242517 (+) False LOC118940407
XM_036949826.1 mRNA downstream 259524 36234292 ~ 36242517 (+) False LOC118940407
XM_036949825.1 mRNA downstream 264570 36239338 ~ 36242305 (+) False LOC118940407
XM_021568352.2 mRNA downstream 435435 36410203 ~ 36417254 (+) True LOC110493841
XM_036949841.1 mRNA downstream 517514 36492282 ~ 36541078 (+) False LOC110493174
TU1652130 other upstream 222753 35746872 ~ 35751790 (+) True G1443251
TU1652084 other upstream 229901 35673964 ~ 35744642 (+) True G1443221
TU1651374 other upstream 790003 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 790003 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 1671934 34301487 ~ 34302609 (+) False LOC110493778
TU1652322 other downstream 264176 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 356467 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 517609 36492377 ~ 36529730 (+) False LOC110493174
TU1652965 other downstream 568251 36543019 ~ 36557771 (+) True LOC110493174
TU1653174 other downstream 882798 36857566 ~ 36861009 (+) True G1444198

Expression Profile