RNA id: TU1652238


Basic Information

Item Value
RNA id TU1652238
length 2331
lncRNA type read_through
GC content 0.39
exon number 2
gene id G1443358
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35980006 ~ 36019231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCACATATTAAAAACCTGGAAAAATACACATGGTTCCATTTTTAACTTACaaagtacattttttaaatgaataaatGATTGCAAAATATAATCTTTGAGTTTCATTTAAGTTACCTTTATCTGCCAATAGTGTTGAAGTGAAGATTACATATCCATCTGTccaaatatttacaaaaacaaTACTACTTTCCAGGGGATGTACTTACTTTTTCACATGACTGTCTGTACATTAGGACATAACATTTAAGTGATACCCTGCTAGGTATAGATTCAAGATATTGTTCCTCATCTCCTGCTACTGTAAAGTAGGCTTTTAAAGGCTGCTAATCATACTGTCATAATTTAAAGTAAAACCATACTGTTTTTGTGACACCTTATTAAGACATTAACAATACACTACCGTaagcaacatttttttaaaatcatgGCGATATGGCAGTTTGCAACGACAGTCATTGTAACAAAGCTCTTTGTGTAATTTCTTAACAAAAATGGAGGCTGTCAAAATGACCATGGCCTGGAGCTGATTTGGCTTTGTCCATGTTTTTGTCAGCTCTTTAGGGCACATGACTAAAGATAGACTCAGTGAGATGACGttgcatgcccaaagtaaacacTATATCAGGTACATTTACACAACAACTAAGAGTGTTGATGGACAAGGCTAAAATGATTTTGTTTTGACCCCGCAGCTGTTTTGGTCCCATTGTGGCAGAGCGATGTGCCCCCATGCACATGCGCAGATACCAGAGAAggctgtgagaggagctataGTAGGACGGGATGAAACGGTATCCAACCACATGTTTAACTCCcatctattccattccagccattacaatgagcccgtcctcttaTAGGTCCTCCCACTGGCAGATTCatgctcatctcaatatctgccgTGCTGCTTGTTGCAATGTTATCTCGCTGAGTCGATCTCACTGCACATCACTTTCTTGTAGGGATTGTGTTATTCATGATTACACTGTATATTGCACTCATACTGATTAAGTATATTTGCCAATAAATGGCAGTTAATATAGCCATAAATTGTGTTTGCTTCGTATTGAGCTAATTCTTTAAAAtgtcacatttatttaactaggcaagtcagttaagaacaaattcttattttcaatgagggcctaggaacagtgagttaactgccttgttcaggggcagaattacagatttttaccttgccagctcggcaTTTCAATCTTGCAacgtttcggttactagtccaatgctctaaccactaggctccctgccaccCCATGTCTTCTTAAGGATTCATGGCTTCATAAGAATTCAAATTGGAATACTACAGAATCAAAAAGGGAAGCACTGAATTGCATGTGATCTCCCATGGATAGCAGGAACCTGTAGATGCCTAATTTCACAAATGCTTTACTTAATTCAGTTTTAGTTAGTTTGGTAGCTTTCAAACAAAAGAATCCTCACACTACCGGCTGTTAAAGGTAATGTTCCTGTGTTCACGGAGaccgcattcacggtaaacgctgtaTATGTCGGTACAATCAGAAAATGACCTTTAAATAGCGCATAGCCAACAAAGTGCTATCAGATTGAATCCTGGCCTTGAGCTGCTTACCACCTTCCGTTCTTTGGAAGACCAGATTTGAGGTGAATCAGTattgtttgtttaaaaaataaacaaatacatttcaGACAATTTGTTACAATGCAAGTTTTATAGGTCAATTTGGGGTTTTGGGGTCATGTTCTCTACAGGGCGCCATTTTAGACCAGGCCTCTGAAGAGGAATGAGAGGGATGCTCCCAGAGCTAAACCCAGGGACAAGAAGAAGGCCATAATGGCTCCAGCTGTCTCCGCTTCATGAGCAGCAACttttctgtggagagagagaatgacagccGATCAGGTGTGGTAAGATTTTTGGTGCAACCTCATTTCTGTCAACCTTGGAGACATTTTTCTCTCGTAATGACCCTTGCAACGTGAGTAAACTAACCATAACATTTTAAATAGACAGGAGTTCCAAAAATGAAATGAAAgccatttttctcagttccacgctatgagcagttaatgcctttttgcttggtagtaCAGAATTGCTTAGCGTTTACCATGTGTGTTATGCCTCGTCCTTCTAACAGACATTGTGACTTTAATAATTATCCCCCTATTTCTAAACTTTATTTGCCTAGCTAAAATGTTTGAATCCTTGACTAATGCTCAGCCAAGATCTTTCTTTACTTCAAAATCTATTCTAAATGTGCATCAGTCGGGCTTCAGACCAGGGCATAGCACCTTCTCGGCAGCATCACTGGTTTTAAATGAT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1652237 lncRNA upstream 4200 35975585 ~ 35975806 (+) True G1443357
TU1652236 lncRNA upstream 5238 35974543 ~ 35974768 (+) True G1443356
TU1652233 lncRNA upstream 8797 35970917 ~ 35971209 (+) True G1443353
TU1652232 lncRNA upstream 10049 35969590 ~ 35969957 (+) True G1443352
TU1652229 lncRNA upstream 17565 35962211 ~ 35962441 (+) True G1443349
TU1652293 lncRNA downstream 100669 36119900 ~ 36120323 (+) True G1443400
TU1652294 lncRNA downstream 101488 36120719 ~ 36121035 (+) True G1443401
TU1652295 lncRNA downstream 102209 36121440 ~ 36122037 (+) True G1443402
TU1652296 lncRNA downstream 102873 36122104 ~ 36122464 (+) True G1443403
TU1652307 lncRNA downstream 141797 36161028 ~ 36162245 (+) True G1443414
XM_021568328.2 mRNA upstream 24359 35855110 ~ 35955647 (+) False LOC110493827
XM_021568329.2 mRNA upstream 24359 35855110 ~ 35955647 (+) False LOC110493827
XM_021568331.2 mRNA upstream 24359 35855110 ~ 35955647 (+) False LOC110493827
XM_036949803.1 mRNA upstream 24359 35855130 ~ 35955647 (+) True LOC110493827
XM_021568326.2 mRNA upstream 132549 35838159 ~ 35847457 (+) True LOC110493823
XM_036949824.1 mRNA downstream 215061 36234292 ~ 36242517 (+) False LOC118940407
XM_036949826.1 mRNA downstream 215061 36234292 ~ 36242517 (+) False LOC118940407
XM_036949825.1 mRNA downstream 220107 36239338 ~ 36242305 (+) False LOC118940407
XM_021568352.2 mRNA downstream 390972 36410203 ~ 36417254 (+) True LOC110493841
XM_036949841.1 mRNA downstream 473051 36492282 ~ 36541078 (+) False LOC110493174
TU1652130 other upstream 228216 35746872 ~ 35751790 (+) True G1443251
TU1652084 other upstream 235364 35673964 ~ 35744642 (+) True G1443221
TU1651374 other upstream 795466 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 795466 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 1677397 34301487 ~ 34302609 (+) False LOC110493778
TU1652322 other downstream 219713 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 312004 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 473146 36492377 ~ 36529730 (+) False LOC110493174
TU1652965 other downstream 523788 36543019 ~ 36557771 (+) True LOC110493174
TU1653174 other downstream 838335 36857566 ~ 36861009 (+) True G1444198

Expression Profile