RNA id: TU1652295



Basic Information


Item Value
RNA id TU1652295
length 598
lncRNA type intronic
GC content 0.42
exon number 1
gene id G1443402
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 36121440 ~ 36122037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCAACATGCAACAAAATATTATGTAAGGCTCTATGCATGCcagcacaatgcatcaccgggggcaaactacctgccctccaggacacctactccacctgatgtcacaggaaggccataaagatcatcatggacaaccacctgagccactgcctgttcacctcgctatcatccagaaggcgaggtcagttcaGGTTCgtcaaagcagggacagagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccaccactaacattgagtggctgctgccaacatagtgactcaactccagccactttaagaatggaaattgatggaaattgatgtaaaaaaatgtatcactagccactttaaactatgccacataatataatgtttacataccctatattactcatctcatatgtatatgtatatactgtactctataccacctactgcatctttatgtaatacatgtatcactagccactttaaactatgccactttgtttacataccctacattactcatctcatatgtatatactgtactcgataccatctactgcttcttgcctatgccgttctgtaccatcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1652294 lncRNA upstream 405 36120719 ~ 36121035 (+) True G1443401
TU1652293 lncRNA upstream 1117 36119900 ~ 36120323 (+) True G1443400
TU1652250 lncRNA upstream 90787 35991150 ~ 36030653 (+) False G1443369
TU1652241 lncRNA upstream 101987 35982307 ~ 36019453 (+) True G1443361
TU1652296 lncRNA downstream 67 36122104 ~ 36122464 (+) True G1443403
TU1652307 lncRNA downstream 38991 36161028 ~ 36162245 (+) True G1443414
TU1652308 lncRNA downstream 44762 36166799 ~ 36167050 (+) True G1443415
TU1652313 lncRNA downstream 55958 36177995 ~ 36178210 (+) True G1443420
TU1652314 lncRNA downstream 57466 36179503 ~ 36179871 (+) True G1443421
XM_021568328.2 mRNA upstream 165793 35855110 ~ 35955647 (+) False LOC110493827
XM_021568329.2 mRNA upstream 165793 35855110 ~ 35955647 (+) False LOC110493827
XM_021568331.2 mRNA upstream 165793 35855110 ~ 35955647 (+) False LOC110493827
XM_036949803.1 mRNA upstream 165793 35855130 ~ 35955647 (+) True LOC110493827
XM_021568326.2 mRNA upstream 273983 35838159 ~ 35847457 (+) True LOC110493823
XM_036949824.1 mRNA downstream 112255 36234292 ~ 36242517 (+) False LOC118940407
XM_036949826.1 mRNA downstream 112255 36234292 ~ 36242517 (+) False LOC118940407
XM_036949825.1 mRNA downstream 117301 36239338 ~ 36242305 (+) False LOC118940407
XM_021568352.2 mRNA downstream 288166 36410203 ~ 36417254 (+) True LOC110493841
XM_036949841.1 mRNA downstream 370245 36492282 ~ 36541078 (+) False LOC110493174
TU1652130 other upstream 369650 35746872 ~ 35751790 (+) True G1443251
TU1652084 other upstream 376798 35673964 ~ 35744642 (+) True G1443221
TU1651374 other upstream 936900 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 936900 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 1818831 34301487 ~ 34302609 (+) False LOC110493778
TU1652322 other downstream 116907 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 209198 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 370340 36492377 ~ 36529730 (+) False LOC110493174
TU1652965 other downstream 420982 36543019 ~ 36557771 (+) True LOC110493174
TU1653174 other downstream 735529 36857566 ~ 36861009 (+) True G1444198

Expression Profile