RNA id: TU1652317


Basic Information

Item Value
RNA id TU1652317
length 295
lncRNA type read_through
GC content 0.51
exon number 2
gene id G1443424
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 36193204 ~ 36213034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggCCAAAAATAAGGCTCCCCTTTTTGGTACTTGGTGGGGATTTCCCAGCCGTGGTGCCTTTATTTCGGGTGTCTCGTAATACGACTGTacgcaaagcctgcactgaacatagcctccctcctgtcatgaacactccctccctgtccactcaagagtggctcatggtttaatacgactgtaggcaaagcctgcactgaacatagcctccctcctgtcatgaacactccctccctgtccactcaagagtggctcatggtttaatacgactgtaggcaaagcctgcactgaacatagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1652314 lncRNA upstream 23148 36179503 ~ 36179871 (+) True G1443421
TU1652313 lncRNA upstream 24809 36177995 ~ 36178210 (+) True G1443420
TU1652308 lncRNA upstream 35969 36166799 ~ 36167050 (+) True G1443415
TU1652307 lncRNA upstream 40774 36161028 ~ 36162245 (+) True G1443414
TU1652296 lncRNA upstream 80555 36122104 ~ 36122464 (+) True G1443403
TU1652323 lncRNA downstream 11635 36224669 ~ 36225530 (+) True G1443429
TU1652320 lncRNA downstream 28976 36242010 ~ 36242642 (+) True LOC118940407
TU1652763 lncRNA downstream 90125 36303159 ~ 36303360 (+) True G1443842
TU1652816 lncRNA downstream 172840 36385874 ~ 36386365 (+) True G1443875
TU1652948 lncRNA downstream 270103 36483137 ~ 36483371 (+) True G1444006
XM_021568328.2 mRNA upstream 247372 35855110 ~ 35955647 (+) False LOC110493827
XM_021568329.2 mRNA upstream 247372 35855110 ~ 35955647 (+) False LOC110493827
XM_021568331.2 mRNA upstream 247372 35855110 ~ 35955647 (+) False LOC110493827
XM_036949803.1 mRNA upstream 247372 35855130 ~ 35955647 (+) True LOC110493827
XM_021568326.2 mRNA upstream 355562 35838159 ~ 35847457 (+) True LOC110493823
XM_036949824.1 mRNA downstream 21258 36234292 ~ 36242517 (+) False LOC118940407
XM_036949826.1 mRNA downstream 21258 36234292 ~ 36242517 (+) False LOC118940407
XM_036949825.1 mRNA downstream 26304 36239338 ~ 36242305 (+) False LOC118940407
XM_021568352.2 mRNA downstream 197169 36410203 ~ 36417254 (+) True LOC110493841
XM_036949841.1 mRNA downstream 279248 36492282 ~ 36541078 (+) False LOC110493174
TU1652130 other upstream 451229 35746872 ~ 35751790 (+) True G1443251
TU1652084 other upstream 458377 35673964 ~ 35744642 (+) True G1443221
TU1651374 other upstream 1018479 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 1018479 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 1900410 34301487 ~ 34302609 (+) False LOC110493778
TU1652322 other downstream 25910 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 118201 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 279343 36492377 ~ 36529730 (+) False LOC110493174
TU1652965 other downstream 329985 36543019 ~ 36557771 (+) True LOC110493174
TU1653174 other downstream 644532 36857566 ~ 36861009 (+) True G1444198