RNA id: TU1656754


Basic Information

Item Value
RNA id TU1656754
length 1678
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G1447558
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 39697218 ~ 39717880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGCTGCGCACCTTGCATCACTTTACTAGAGGGTTACTATCGATTCTTTACACTGAGTATGCCTTCGGCTTCTGGCAAAGAGgaatagctgctgctttggcaaaagctaatggggatccttgtAAACCAATAAAACCAATACACACAGGGCTATTGTCAACCAAACTGACTCCTCCAATCAGGCTTTGCATAGACCGGTGATTGGGGAATACCCTTAATCGATacagcaacccccccccctcccccttatgTTTGTCCAAGTGAGAACATTACCCCTCCCCTTTGATTGCAAATACCCAAGTTGGAAGTAGATTCTTGATTGCATGCGTCCATAAAAGATTATTACTTTTTtgggacattttttatttaattgaatTGCTTTTATCATTGTGATGTTTCTTTTCAGCTGTAGGTTTGCACAACTCAATcttcagattattattattattattattattgttgtttttttgtagCGTTTTTATGATTtgaaagttgttgttttttgtagGGATTGAggcattatttaaaaaataatgcaGCTAAATGAACTCCGGGTCGGTTGGGACTGGGTTACTGGATGTAAGCCTTTTGCCTTGTGACCGCTATTGGTAAGTTATTCTATGGCAGGAAGGAAGTGACGAAATGGGAGAAAAGGTGCATGTAGAAGTGAATTAGTTTTGGTGAGGTCTAAACCAAAAGTAATGTGCAATACTGCTGTCAGATTTAGGCCTGTGAGTCGTATGTCAGGGATATTGGTCTGTTTCTTCTTTTTTGTTTTGTCGGGTTTTTTCCTACTCCAAGCCCATACATTTGTTGATCTTGTCAGGCAAATGTATGTGAGTCATCATTTGAATGGTTTATGCTGTCTGTTCACCGTGCTGTGACAGTCCACTTAACTCTTAAAGAACACTTCTCCAACTATATGGTCATTGTCTTCATCAGCCCCACTACAGTCATCATCAATAGGTTTTGATGCTTGTTTATTTGTTTCTCATTGAACTGTTATACCCATCACTGCACTGAAGTCATGTTAATTTGAATGCACTATATTCTCAAGAATGCTTTTTCCCAGTATCTATCAATGTAACTGTTTTGTTAGTTAGCCAACTCACTGCGTTTAACTCACACAAAAAATTAAAGCACACGAAAGCTATATCCTGAAGGGACCATTCTTTACTATTTAAACATTTTGTCCTTAACAGGATTCATGTCATACACTCAATTTATTTCATCTCACTGTTGCCTATTACGGATTAAAGAATGGATAACTTGCAGATGGAGGTATAGAGTTGAGGAAAGCGAGAGAGTGTaacctactgtatctatctacgtGTGAGCGGAGTGAAGGATAACTTGCTGCTTAGGGAGAGGGCAGAACAGGCCTGAGCTAAGTCTTCCTGACCGTGAGTCACAGCTCGCTGTGTAGTCACGTGAGTCACGCGTTAACCAGGCTACCATCCCAGGAGTTGTGGAAACACTACAATTGACCTGTCCTGGAGTATCTGACCATCACCGTGATCGATGTAAACAGTCAGGCAACTGTTTTGTATGTATATAAATATCTAAGAAAAATGCATATTCCTAGTCAAGTAGTCTATGGTGTATAAAAACCAACCTTGTTGGACTATGTAGCATCTTAATAAATTCAATGAATAAACCCTCtaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1656761 lncRNA upstream 89670 39606969 ~ 39607548 (+) True G1447563
TU1656671 lncRNA upstream 262672 39429976 ~ 39434546 (+) True G1447480
TU1656196 lncRNA upstream 574250 39122767 ~ 39122968 (+) True G1447017
TU1656166 lncRNA upstream 606070 39089905 ~ 39091148 (+) True G1446992
TU1656168 lncRNA upstream 607740 39089269 ~ 39089478 (+) True G1446994
TU1656848 lncRNA downstream 2917 39720797 ~ 39767245 (+) True G1447648
TU1657239 lncRNA downstream 88064 39805944 ~ 39806156 (+) True G1448007
TU1657376 lncRNA downstream 186380 39904260 ~ 39904461 (+) True G1448130
TU1657396 lncRNA downstream 223045 39940925 ~ 39941301 (+) True G1448150
TU1657421 lncRNA downstream 269654 39987534 ~ 39988009 (+) True G1448174
XM_021568444.2 mRNA upstream 1192 39651864 ~ 39696026 (+) True LOC110493884
XM_021568442.2 mRNA upstream 175720 39500696 ~ 39521498 (+) True ccndbp1
XM_036949864.1 mRNA upstream 178781 39500696 ~ 39518437 (+) False ccndbp1
XM_021568437.2 mRNA upstream 277407 39396040 ~ 39419811 (+) False pmepa1
XM_021568449.2 mRNA downstream 188393 39906273 ~ 39917797 (+) True LOC110493887
XM_036949870.1 mRNA downstream 230746 39948626 ~ 40269835 (+) False LOC110493888
XM_021568451.2 mRNA downstream 230747 39948627 ~ 40269835 (+) False LOC110493888
XM_036949871.1 mRNA downstream 368494 40086374 ~ 40265255 (+) True LOC110493888
XM_036949876.1 mRNA downstream 594996 40312876 ~ 40361715 (+) False LOC110493889
TU1656618 other upstream 270318 39343027 ~ 39426900 (+) True pmepa1
TU1655280 other upstream 1386354 38309129 ~ 38310864 (+) True G1446149
TU1654008 other upstream 2108491 37585880 ~ 37588727 (+) False rbl1
TU1654009 other upstream 2108491 37586665 ~ 37588727 (+) True rbl1
TU1653937 other upstream 2256806 37434775 ~ 37440412 (+) True chd6
TU1657230 other downstream 82056 39799936 ~ 39800236 (+) True G1447998
TU1658524 other downstream 1231662 40949542 ~ 40968066 (+) True LOC110493893
TU1659644 other downstream 1924243 41642123 ~ 41693718 (+) True LOC110493897
TU1659721 other downstream 2075003 41792883 ~ 41890515 (+) True G1450387
TU1661375 other downstream 3610706 43328586 ~ 43459832 (+) False G1451948

Expression Profile