RNA id: TU1659721



Basic Information


Item Value
RNA id TU1659721
length 322
RNA type TUCP
GC content 0.48
exon number 2
gene id G1450387
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 41792883 ~ 41890515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgatcccaaacaccgcccgggcaatgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatctcaaccccatagaaaatctttggatggagttgaaagtccgtgtttcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacatttgacctctgtcattgccaacaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1659718 lncRNA upstream 33001 41756729 ~ 41759882 (+) True G1450384
TU1659697 lncRNA upstream 62699 41729424 ~ 41730184 (+) True G1450363
TU1659422 lncRNA upstream 383026 41409621 ~ 41409857 (+) True G1450093
TU1659400 lncRNA upstream 402669 41390006 ~ 41390214 (+) True G1450071
TU1659189 lncRNA upstream 554739 41237833 ~ 41238144 (+) True G1449866
TU1659807 lncRNA downstream 130 41890645 ~ 41891072 (+) False G1450462
TU1659802 lncRNA downstream 195 41890710 ~ 41890949 (+) False G1450462
TU1659803 lncRNA downstream 673 41891188 ~ 41894245 (+) False G1450462
TU1659805 lncRNA downstream 1010 41891525 ~ 41894245 (+) True G1450462
TU1659818 lncRNA downstream 26474 41916989 ~ 41917232 (+) True G1450473
XM_021568477.2 mRNA upstream 86703 41641874 ~ 41706180 (+) False LOC110493897
XM_021568463.2 mRNA upstream 245169 41530177 ~ 41547714 (+) False LOC110493894
XM_021568464.2 mRNA upstream 245169 41531050 ~ 41547714 (+) True LOC110493894
XM_021568466.2 mRNA upstream 246380 41530173 ~ 41546503 (+) False LOC110493894
XM_036949886.1 mRNA upstream 708064 40949923 ~ 41084819 (+) False LOC110493893
XM_021568493.2 mRNA downstream 139475 42029990 ~ 42108742 (+) False LOC110493904
XM_021568494.2 mRNA downstream 139476 42029991 ~ 42108741 (+) True LOC110493904
XM_036949898.1 mRNA downstream 439050 42329565 ~ 42401794 (+) False LOC110493907
XR_002469211.2 mRNA downstream 439050 42329565 ~ 42401794 (+) False LOC110493907
XM_036949895.1 mRNA downstream 439051 42329566 ~ 42407845 (+) False LOC110493907
TU1659644 other upstream 99165 41642123 ~ 41693718 (+) True LOC110493897
TU1658524 other upstream 824817 40949542 ~ 40968066 (+) True LOC110493893
TU1657230 other upstream 1992647 39799936 ~ 39800236 (+) True G1447998
TU1656618 other upstream 2365983 39343027 ~ 39426900 (+) True pmepa1
TU1655280 other upstream 3482019 38309129 ~ 38310864 (+) True G1446149
TU1661375 other downstream 1438071 43328586 ~ 43459832 (+) False G1451948
TU1661383 other downstream 1438584 43329099 ~ 43409816 (+) True G1451956
TU1661373 other downstream 1443000 43333515 ~ 43428562 (+) False G1451948
TU1661374 other downstream 1443000 43333515 ~ 43436740 (+) True G1451948
TU1661834 other downstream 1591745 43482260 ~ 43483693 (+) True G1452359

Expression Profile