RNA id: TU1659805



Basic Information


Item Value
RNA id TU1659805
length 609
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1450462
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 41890645 ~ 41894245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTTTTACTGcatgttcaatggagattctccattcaaagtgctttttagtccatGACTAGTCTTAATCTGTATCAGGGAAACCGGCCCAAAGAAATACAATACAAATAGGGACACGTTTCcgggacacagattaagcctggtcttCAACTAAAAAGCAAACTCAATGGAGAATATTGAAAACGCTTTTTAGTCAAGGATAAGGTTTAATATGTGTCCAGGAAACCGCCCCATAGTTCTGTTAATTCTGGTGGCATCATACACTTtgtatctgtcacgttctgacctttatttcctttgttttgtcattatttagtatggtcagggcgtgagttgggtgggcagtctgtttgtttttctatgatttgggtatttctatgtttcggcctagtatggttctcaatcagaggcaggtgtcattagttgtctctgattgagaatcatacttaggtagcctgggtgtcactgtgtgtttgggTGATtgctcctgtctctgtgtttacaccagataggactgttttgcgttttcacatttcttgtttttgttagtttgttcatgtgaagtgatttattaaaacatgaataaccaccacgctgcgctttggtccgcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1659807 lncRNA upstream 453 41890645 ~ 41891072 (+) False G1450462
TU1659802 lncRNA upstream 576 41890710 ~ 41890949 (+) False G1450462
TU1659719 lncRNA upstream 2368 41888071 ~ 41889157 (+) True G1450385
TU1659765 lncRNA upstream 87009 41803849 ~ 41804516 (+) True G1450425
TU1659761 lncRNA upstream 92573 41797076 ~ 41798952 (+) True G1450421
TU1659818 lncRNA downstream 22744 41916989 ~ 41917232 (+) True G1450473
TU1659819 lncRNA downstream 23251 41917496 ~ 41917805 (+) True G1450474
TU1659832 lncRNA downstream 51220 41945465 ~ 41945755 (+) True G1450487
TU1659833 lncRNA downstream 52044 41946289 ~ 41946496 (+) True G1450488
TU1659834 lncRNA downstream 52449 41946694 ~ 41946947 (+) True G1450489
XM_036949891.1 mRNA upstream 3844 41822362 ~ 41887681 (+) True LOC110493901
XM_021568477.2 mRNA upstream 185345 41641874 ~ 41706180 (+) False LOC110493897
XM_021568463.2 mRNA upstream 343811 41530177 ~ 41547714 (+) False LOC110493894
XM_021568464.2 mRNA upstream 343811 41531050 ~ 41547714 (+) True LOC110493894
XM_021568466.2 mRNA upstream 345022 41530173 ~ 41546503 (+) False LOC110493894
XM_021568493.2 mRNA downstream 135745 42029990 ~ 42108742 (+) False LOC110493904
XM_021568494.2 mRNA downstream 135746 42029991 ~ 42108741 (+) True LOC110493904
XM_036949898.1 mRNA downstream 435320 42329565 ~ 42401794 (+) False LOC110493907
XR_002469211.2 mRNA downstream 435320 42329565 ~ 42401794 (+) False LOC110493907
XM_036949895.1 mRNA downstream 435321 42329566 ~ 42407845 (+) False LOC110493907
TU1659721 other upstream 1010 41792883 ~ 41890515 (+) True G1450387
TU1659644 other upstream 197807 41642123 ~ 41693718 (+) True LOC110493897
TU1658524 other upstream 923459 40949542 ~ 40968066 (+) True LOC110493893
TU1657230 other upstream 2091289 39799936 ~ 39800236 (+) True G1447998
TU1656618 other upstream 2464625 39343027 ~ 39426900 (+) True pmepa1
TU1661375 other downstream 1434341 43328586 ~ 43459832 (+) False G1451948
TU1661383 other downstream 1434854 43329099 ~ 43409816 (+) True G1451956
TU1661373 other downstream 1439270 43333515 ~ 43428562 (+) False G1451948
TU1661374 other downstream 1439270 43333515 ~ 43436740 (+) True G1451948
TU1661834 other downstream 1588015 43482260 ~ 43483693 (+) True G1452359

Expression Profile