RNA id: TU1660584


Basic Information

Item Value
RNA id TU1660584
length 233
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1451210
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 42425633 ~ 42425865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgaggacccatgacaaatattttcagtctcctgagggggaataggtttggttgtgccttcttcacgactttGGTgttcatacgcacaaaaagcttatttctccaattttgtgcacaaatttgtttacatccctgttagtgagcatttctctttgcgaagataatccatccacctgacaggtgtggcatatcaagaagccgattaaacagcatgatcattacaaaggtgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1660575 lncRNA upstream 10378 42414928 ~ 42415255 (+) True G1451201
TU1660574 lncRNA upstream 11347 42414076 ~ 42414286 (+) True G1451200
TU1660551 lncRNA upstream 14300 42410730 ~ 42411333 (+) True G1451179
TU1660550 lncRNA upstream 17871 42406598 ~ 42407762 (+) True LOC110493907
TU1660552 lncRNA upstream 24019 42400975 ~ 42401614 (+) False LOC110493907
TU1660929 lncRNA downstream 116224 42542089 ~ 42542319 (+) True G1451534
TU1660947 lncRNA downstream 138080 42563945 ~ 42588386 (+) True G1451551
TU1660960 lncRNA downstream 165851 42591716 ~ 42591935 (+) True G1451562
TU1660944 lncRNA downstream 206803 42632668 ~ 42636308 (+) True G1451549
TU1660977 lncRNA downstream 211358 42637223 ~ 42697720 (+) True G1451578
XM_036949895.1 mRNA upstream 17788 42329566 ~ 42407845 (+) False LOC110493907
XM_036949899.1 mRNA downstream 9463 42435328 ~ 42516956 (+) False LOC110493908
XM_036949900.1 mRNA downstream 9463 42435328 ~ 42516956 (+) False LOC110493908
XM_036949901.1 mRNA downstream 9463 42435328 ~ 42516956 (+) False LOC110493908
XM_036949902.1 mRNA downstream 9463 42435328 ~ 42516956 (+) True LOC110493908
XM_036949903.1 mRNA downstream 102884 42528749 ~ 42532546 (+) False LOC110493909
TU1659721 other upstream 535118 41792883 ~ 41890515 (+) True G1450387
TU1659644 other upstream 731915 41642123 ~ 41693718 (+) True LOC110493897
TU1658524 other upstream 1457567 40949542 ~ 40968066 (+) True LOC110493893
TU1657230 other upstream 2625397 39799936 ~ 39800236 (+) True G1447998
TU1656618 other upstream 2998733 39343027 ~ 39426900 (+) True pmepa1
TU1661375 other downstream 902721 43328586 ~ 43459832 (+) False G1451948
TU1661383 other downstream 903234 43329099 ~ 43409816 (+) True G1451956
TU1661373 other downstream 907650 43333515 ~ 43428562 (+) False G1451948
TU1661374 other downstream 907650 43333515 ~ 43436740 (+) True G1451948
TU1661834 other downstream 1056395 43482260 ~ 43483693 (+) True G1452359

Expression Profile