RNA id: TU1661504


Basic Information

Item Value
RNA id TU1661504
length 1606
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1452073
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43315934 ~ 43318830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGTCCCTGTAGCGGCCGCTGCGCTCCCTGCTCCGGGTGCGGCTCCGGCGCCTCTCCTTGCTGCGGCTCCGCTTTCGCTCGCGGCTGCGGCTCCTCTTGTGGTCATGGCTCTTCTTGCGATCACGGCTCTTGCTTCTCTTCCGGTCTTTGCTTCGGCTCCTGCTCTTCTTTTTCTTCTTGCTGCGCTCCTCATGGCCATTGGGACTACTGGGCTTGATCTCATCCTAAGCAGGGCCAACAGAAGAACAGCATAAGGACGAAGAGGCAACATTTCAAGTTGTCAGGATCAAGGTGTGTGGGAACAAGAGAAAATATAGTTTAAAAATAGTATTCATACAAAAGTTAACATAGGGACAGATCTACAGTTAAGTTATTTTAATGAGTGTCTATCAGCCCCCTATCATAAATGTTGATTACTCATTTTGCATAAAAATCAATGAGTACTATGAGTACTAATACATAACCTACATCTCAGGTGCATTTGTCTTCAGCAGCCCCATCAGGATCATTACCAAGGCTATTCTttgcctaacatgctgaccacaccgctcagGTTGCGTgcacgagcgttgcaaaataaatgtacatattCAATCATTGTGgccaggtgctaaaatagaaacaggttctatttgtgatgctcaACACGCTGCAAGTCcagcttctcccatctcctcattggtttttaagagcatatacccacgtCCCAAGTCCTCATTGGtgtttaggagcatatacccacatgggtgattgaaagattaacTAACGTCCACACGCCAGCCGGTTGTAATAATGCACCGTAAAGCTGGTTGCAAACGCCATATTAAGCCGAAAGATAAAATAAAAAGCCAGAGGAAGGAGAGAtcttatctgtggattaattgtctgagtagaggaccttgtgcatttcaggtaaaacaacccaatgtttatatcccaggacaaattagctagcaacagcaagctagctaaattgccatagatgttcaatgctttttgacctgttcCAAAATGAATATGATtggttcagtttgttttgatatttcaacctgcgtgtcctgatcgtgttTGGTGTGGAGGTACAAAATCACATGCATGTGtccggtttggtcagcatgtaagacCAATGTGCCCATGCTAGCAGCGAGACAGATCGATTTCCAGTGGGGGGGATGCCATTCTAGTGATCTCCACCCAGTTTAATTTTGTGGACTGTAAGAGCTCGCCCTGAAGCAAACAGGGATTCACACTGCTTAGCAATATTGACTACCAAGGAAAGCTATGATTAAATTATAAGATGAGGTACACAAAATTCCTTAGTTGGTGCTGTAGCCAGCAGCATAGAAGAGTTCCATGTTTCCTACAGTTTGTACTTAGTTCTATCAAATTTAGCCTTTACATAAAACAGTGACAAATATAATGGACTTATGGGGAAATAAACATTTGTGAATGAGCATGCAAAAATAATTACATTCTGGTCAACCATGGAGAAAACCTGTTTAACACAAAATAGCGTTATGTAAAATAACTTGGTGAAAGCAGCATAATAACAAAATCCACACATTCTCTCTCACTAGAATGAAAGAGTGAACATTGTGAACGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1661380 lncRNA upstream 42763 43272151 ~ 43273171 (+) True G1451953
TU1661385 lncRNA upstream 43877 43271313 ~ 43272057 (+) True G1451958
TU1661478 lncRNA upstream 63260 43250676 ~ 43252674 (+) True G1452048
TU1661472 lncRNA upstream 71080 43244509 ~ 43244854 (+) True G1452043
TU1661467 lncRNA upstream 74563 43241049 ~ 43241371 (+) True G1452038
TU1661519 lncRNA downstream 3136 43320785 ~ 43321022 (+) True G1452087
TU1661521 lncRNA downstream 8746 43326395 ~ 43326698 (+) True G1452089
TU1661522 lncRNA downstream 9069 43326718 ~ 43326932 (+) True G1452090
TU1661378 lncRNA downstream 14918 43332567 ~ 43341386 (+) True LOC118940144
TU1661839 lncRNA downstream 179887 43497536 ~ 43497760 (+) True G1452364
XM_021568344.2 mRNA upstream 45674 43260166 ~ 43270260 (+) True LOC110493836
XM_021568523.2 mRNA upstream 363736 42950528 ~ 42952198 (+) True LOC110493924
XM_021568513.2 mRNA upstream 539639 42770305 ~ 42776295 (+) False LOC110493915
LOC118940459 mRNA downstream 2148 43319797 ~ 43330019 (+) True LOC118940459
LOC118940518 mRNA downstream 5879 43323528 ~ 43323647 (+) True LOC118940518
LOC110493832 mRNA downstream 12780 43330429 ~ 43330803 (+) True LOC110493832
XM_036948407.1 mRNA downstream 14666 43332315 ~ 43332962 (+) False LOC118940144
LOC118940451 mRNA downstream 15781 43333430 ~ 43334041 (+) True LOC118940451
TU1659721 other upstream 1425419 41792883 ~ 41890515 (+) True G1450387
TU1659644 other upstream 1622216 41642123 ~ 41693718 (+) True LOC110493897
TU1658524 other upstream 2347868 40949542 ~ 40968066 (+) True LOC110493893
TU1657230 other upstream 3515698 39799936 ~ 39800236 (+) True G1447998
TU1656618 other upstream 3889034 39343027 ~ 39426900 (+) True pmepa1
TU1661375 other downstream 10937 43328586 ~ 43459832 (+) False G1451948
TU1661383 other downstream 11450 43329099 ~ 43409816 (+) True G1451956
TU1661373 other downstream 15866 43333515 ~ 43428562 (+) False G1451948
TU1661374 other downstream 15866 43333515 ~ 43436740 (+) True G1451948
TU1661834 other downstream 164611 43482260 ~ 43483693 (+) True G1452359

Expression Profile