RNA id: TU1661375


Basic Information

Item Value
RNA id TU1661375
length 2581
RNA type TUCP
GC content 0.53
exon number 4
gene id G1451948
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43328586 ~ 43459832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCCTTAGGATTTGTGGCATTCCTTGTGTATTTGTTTCCCGTTTGTGCCACTTCGTTTCTCCTTTGTACTTGTGACACTATTTGAGGTTTTAACGCCTATCTCTATTAGGTGTGACTGGCAACTGCAGTGGGTTGAATCCTACtagttcagtgtttcccaactccaggcaggggtagagtagccatttttgttgtagccctggagaggcacagctgattgaaagagttgaatcaggtgcaacaacaacaacaagaagaacaacaccaatcaatgtgaagagtgggacatcacagttgggccttgtgttcaacatagctcagtatttgagtgTGTTTCCCGCGCATGCAAGTAGCTTTGATTTCTTCTTCCTCCATAGTTCCCTAAGAACGAACGCCCTCCCCTTTGCAGCAGAGGCCAGGCAAAAGCGCGCGCTTTCTGTGCCACTGGCTTCAATCAGGTCCACCAAACGCAGATAATAAGAGCACCGAGCACCGAAAATTACGTCATTAATTCACTTGAACTCAGCTAGTGAACACACGATGTCTGGAAGAGGTAAAGGCGGCAAGGGACTCGGAAAAGGAGGCGCCAAGCGTCACCGTAAGGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCATTCGCCGTCTGGCTCGCCGTGGCGGCGTGAAGCGTATCTCCGGGCTGATCTACGAGGAGACCCGCGGTGTCCTGAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTTACGGCCATGGACGTGGTCTACGCTCTGAAACGCCAGGGACGCACCCTGTACGGTTTCGGCGGTTAAACGCACTCTTCTCGGAACGTCAACATCCCGACTtgaacccaaaggctcttttaagagccacccacatccgcttcaaaagggtcaaatccattatcgtaggaaaccatgagccactcttgagtggacagggagggagtattcgtgacaggaggctatgttcagtgcaggctttgcctacagtcgtattaaaccatgagccactcttgagtggacagggagggagtgttcatgacaggagggaggctatgttcagtgcaggctttgcctacagtcgtattaaaccatgagccactcttgagtggacagggagggagtgttcatgacaggagggaggctatgttcagtgcaggctttgcgtACAGTCCGTATTACGAGACACCCGAAATAAAGGCACCACGGCTGGGAAATCCCCACCAAGTACCAAAAAGGGGAGCCTTATTTTTGGccattgtaggacttttttggaaacacaccattccccaccagtgacagagcataggctatggtctttgttagggaagcaagcctctgagtggaaggctcttatgcgcgctcagctccactgggcaaatggcaggggcgcctatgagaaagcaggggtgtgtccacggccggcgaattagcttagcttcgtcttcataagagggaaagggctctccaccccctcattcGTTTGTGAGAAGCAGCGAGACATCAGCATCATGCCCGAGCCAGCAAAGTCCGCGCCCAAGAAGGGCTCCAAGAAAGCCGTCACCAAGACCGCAGGGAAAGGCGGCAAGAAACGCCGAAAGTCGAGGAAGGAGAGCTACGCCATTTACGTGTACAAAGTCCTGAAGCAGGTCCACCCCGATACCGGCATCTCCTCCAAGGCCATGGGAATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGGAGAGTCGTCTCGCCTGGCCCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACCGCAGTGCGCCTGCTGCTCCCCGGAGAGCTGGCCAAGCACGCAGTGTTCCGAGGGCACCAAGGCCGTGACCAAGTACACCAGCTCCAAGTAAACAGCCCATTTGGAGTGCTGTAgtaacccaaaggctcttttaagagccacccaaccCTGTCAGTGAAAAAGCaaatccatatgtgtgtgtgtgtgtggaggacatgtcaaaaaggggggagagggaataaatgatgctgacatgaacagggtaggaatgtgtgcatggcagtataacacagtgagtgggattccactcgtgctccgatgactggagcctgtgtaacagtataactttaggccgaaccagggaccctctgcacacatcatcaacaacagtctcagagcaagtgacgtcaccgattgaaactagccgtttcacatcccttacacacacctgtacaagagggaggaggagagagaagaagaggctccaaatctctctctctaggcctagTATCAGGGCGGACAAGCACATGGGGCGCCAGCCTCCATAGCGCCGGCCGCACAGCCAGACACCAAGACCCACAGACACAAAGACCGGCACGAGTGAGTCACGCTGCGGAGTCAAGCGAGGAAGGACTGCGAGAAGGCCacaagcctatctctctctctctctctctctctctctctctgacacgcttttgaaagagacacacagacagagagagagactacctagcacaagaaaacacacaggctccaaatccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1661522 lncRNA upstream 1654 43326718 ~ 43326932 (+) True G1452090
TU1661521 lncRNA upstream 1888 43326395 ~ 43326698 (+) True G1452089
TU1661519 lncRNA upstream 7564 43320785 ~ 43321022 (+) True G1452087
TU1661505 lncRNA upstream 9756 43315934 ~ 43318830 (+) True G1452073
TU1661504 lncRNA upstream 10937 43315934 ~ 43317649 (+) False G1452073
TU1661839 lncRNA downstream 37704 43497536 ~ 43497760 (+) True G1452364
TU1661842 lncRNA downstream 40062 43499894 ~ 43505382 (+) False G1452366
TU1661841 lncRNA downstream 44645 43504477 ~ 43517376 (+) True G1452366
TU1661848 lncRNA downstream 48887 43508719 ~ 43552834 (+) False G1452369
TU1661859 lncRNA downstream 48887 43508719 ~ 43562011 (+) False G1452369
LOC118940518 mRNA upstream 4939 43323528 ~ 43323647 (+) True LOC118940518
XM_021568344.2 mRNA upstream 58326 43260166 ~ 43270260 (+) True LOC110493836
XM_021568523.2 mRNA upstream 376388 42950528 ~ 42952198 (+) True LOC110493924
XM_021568513.2 mRNA upstream 552291 42770305 ~ 42776295 (+) False LOC110493915
XM_036949906.1 mRNA upstream 552291 42770305 ~ 42776295 (+) False LOC110493915
XM_021568531.2 mRNA downstream 480085 43939917 ~ 44074496 (+) False plxnb1b
XM_021568537.2 mRNA downstream 622464 44082296 ~ 44097283 (+) False LOC110493929
XM_036949954.1 mRNA downstream 639124 44098956 ~ 44148363 (+) False setd5
XM_036949951.1 mRNA downstream 643888 44103720 ~ 44148363 (+) False setd5
XM_036949950.1 mRNA downstream 643889 44103721 ~ 44148363 (+) False setd5
TU1659721 other upstream 1438071 41792883 ~ 41890515 (+) True G1450387
TU1659644 other upstream 1634868 41642123 ~ 41693718 (+) True LOC110493897
TU1658524 other upstream 2360520 40949542 ~ 40968066 (+) True LOC110493893
TU1657230 other upstream 3528350 39799936 ~ 39800236 (+) True G1447998
TU1656618 other upstream 3901686 39343027 ~ 39426900 (+) True pmepa1
TU1661834 other downstream 22428 43482260 ~ 43483693 (+) True G1452359
TU1661837 other downstream 31342 43491174 ~ 43492068 (+) True G1452362
TU1661856 other downstream 81832 43541664 ~ 43563701 (+) False G1452369
TU1661935 other downstream 146481 43606313 ~ 43606781 (+) True G1452399
TU1662359 other downstream 1053237 44513069 ~ 44520477 (+) True G1452804

Expression Profile