RNA id: TU1661374


Basic Information

Item Value
RNA id TU1661374
length 8107
RNA type TUCP
GC content 0.49
exon number 4
gene id G1451948
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43328586 ~ 43459832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGAGGTATAAGTAAGACTCTCGAGGTGGCCAGCGGCTCATTCAGACtttctgtgacatactgaagctacCAATATGAGCGGAAGAGGCAAAACCGGAGGCAAGGCCAGGGCGAAGGCAAAGACACGTTCATCCCGTGCCGGGCTCCAGTTCCCCGTGGGCCGTGTGCACAGGCTGCTGCGTAAAGGCAACTACGCCGAGCGTGTGGGCGCTGGCGCACCAGTGTACCTGGCCGCAGTGCTCGAGTACCTGACTGCTGAGATCCTGGAGTTGGCCGGAAACGCTGCCCGTGACAACAAGAAGACTCGTATCATCCATCCCCCGTCACCTGCAGCTGGCAGTCCGTAACGACGAGGAGCTGAACAAACTGCTTGGCGGCGTGACCATCGCTCAGGGTGGTGTTCTGCCCAACATCCAGGCAGTGCTGCTCCCCAAGAAGACTGAGAAGGCCGTCAAAGCCAAGTAAAATCGCTGGTGCGGCTGCAACTTGACTACTCaacccccaaaggctcttttaagagccaaccACCTAGCTCAACAAAAGCGCAAAGTGTCCTTTCTATGCCTGGCCAATTATTTGGCGtgttagatacacacacatatagacggcACCGTGTCAAGTGCCCACATGAGGCCTAAATGAAGGATAACAACTAGTAGGCTAGAATGAGAGCATTATTGCGCGTAAAGTGTAACGTTGCTCGCGGCCCTAACAAAAGACCCAAGCGCGCCTCGGCGAGGGTGGGGGTTGCATTTTGGGGCGGCACGGAGAGGCCGAGCCTCCCGTCCAATGGGCGGCGGAGGAGGCCTCCGCAACGGGCCAATCAGGGCGGTGCGgagatggtgaccaatgagcagaCGCCGCTGCCGGCTTTATAAACTTAGGCATTTTGAGGCTATACTCCGACTGTGAAAGAAGGAAGCTAGCTAGCGCCATGGCCAGAACCAAGCAAACCGCTTGCAAATCCACCGGTGGCAAAGCACCCAGGAAGCAGCTCGCCACCAAGGCTGCGCGCAAGAGCGCTCCGGCCACCGGCGGCGTGAAGAAGCCTCACCGTTACAGGCCCGGCACCGTGGCTCTTAGAGAGAGCCATCGTTACCagaagtccactgagctgctgatccgcaaactgcctttccagcacctggtgcgagaaattgcccaggactttaagaccgacctgcgcttccagagttccgcagtgatggccctgcaggaggcaagcgaggcttacctggtcggcctgttcgaggacaccaacctgtgcgccatccacgccaagagggtgaccaTCACCGTTACAGGCCCGGCACCGTGGCTCTTAGAGAGATCCGTCGTTACCagaagtccactgagctgctgatccgcaaactgcctttccagcgcctggtgcgagaaattgcccaggactttaagaccgacctgcgcttccagagttccgcagtgatggccctgcaggaggcaagcgaggcttacctggtcggcctgttcgaggacaccaacctgtgcgccatccacgccaagagggtgaccatcatgcccaaggacatccagctggcccgtcgtattcgcggagagcgcgcataaacgatgacctgatctccaaaatcccccaaaggctcttttaagagccacgtccatatttcagtcaaaaaggcacaattgttccatttgtacacgcccctttcccaccgtgtatgttccctgttctcgagtcactacagaccgtggttcgattccaggctgtatcaccaccggccgtgattgtaaataagagttggttcttaactgacttgagtcgtttcaataacgctctctatatgtgattagatgtatgcctagagtagaagaggggaaaaatacaCTAGCAGTAATGAGTGATAGTAATGATATAGGGCAAAAAGTGTCAAAAATGGTCACTATGTAGCTAAGAACAACTGACTTTGAAAGTCCCATGTTGCAGTGCCGCTGATGAGAGGGGAAAAGTTTACCGTGGAGCACGGAGGCCATCTAGTGGTTAAACGCGGGTACTGTCAGCGTGTGAGCACGTCATAGTGGCTCCCTATTGGTATTTGATCTTcaggccagcgtttcccaaactcggtcctcgggtccCCAAGTGGGGCACGTTGTGTTTTTTCGATTCCAATTGCTCTTGGAATGTAACATGCTAGAGTCTGTCTATTCCTTTGTGAAAATGGCCATTCAATGATTTCTGGGCCATGTGACATTCCTCGATGGCCCCAAAAATCCATGTTTTGATCCGATCATTACAACGTTAGCTGTGTGCACCCCATAATTCATGCGACTGACTAAGCTATTGAAAGTAAAATGATATATCTCTGTCCGGCGCAAGTGAAAGGTGGTCGAAAAAAATTGTTACCAACGTTGTGGTTGAAGGTACAGGAAATGTTGTAGGCCACCAAATTAGACGTGATATTATTAAGTCGCCCTTCTGTgcttgtttgtgtgcgtgcatagGTAAGTTGTTTCGATATGGTGGAATAAATGGAGAAATGAAAGGAATGTATTTAGTGGGATGAATTCAGTGTGCGATTGAATATTCCAATGCCATACCCATTGATAGGCCTTTAGACTAGATCCGAGATCCCTTAAGAGAAAAGGTATCAGGACAGCAGGAATCAATAGATGTAATCGTCAAGGGCTTGCAAAACAGCTGTTACGAAGCTGCCGGGATGATTGCCCTATTAGTAGTTGACCAATTACAGAATAGCAATCACCAATGCAGGCAGGTACGTGGTGATTGCTGCATTGGCTTCGTAAATAGGCTTCATAGGAACTAAATGGCTCAGCACATGACACCTTCACAGTGCAGAATATTTGATACTATTGACTCCGGTTGAGTAGAGTCGTGTGTCTTTGGCGTGATTTGAAGTCGACTTCTGATGTGGGATTTAGTTCATTTTTCAAAGAAGATTTGCTGACGAATCGAAACCCCTTGACCAAATGATACGACAAAGTAAAGGCCCTAAATACAGGCTGCCAGTTAAATGCAGCAATGACACGGCTAAAGTGTGTCATTGCAGGACAaaagagcaggaattgtctgctgttgCATCTTCACTCATGAGACAGGTAATAGGGGAGCTCCGTGGTGCTGAAAAGGACAGCGCCCCTGGCCATTTGCCAAGGCCTATTTCCCGTTGGAGGGATTTTTGACATGCTATAGGCACAGTTCagtacacccctcacccctatCCTGTAATTGGTCCCAGAATCATCCACTTGATTCCCGACCACCAACCGATTGTCGGGGTGCATTGGTGTAAAATGTGGTCGTCGAGATCAGGTTCTATGGCATCTGTACCTTTTTTTGGAGCTACCTACACCAGTAGGGGAGCTTACAGATAAAGAGTGCACTAGGCTAGAGAGAAAAGTAGCATTCCGtttttcattttctctcttttgATACTTGAGAAACATAGATTCACATGACGTCCAAATCTGCAAGAGACAAAAGCAGCAGAAAATCAGCAGGTGAAGAAAAGGGTTAAGTGAATATGATTTAAGAGCAGTCAAATGAAGTAATAGTGACATAGATTGTAAGAAATGAAATGTACCATGTGAACATTGCATTGTGGCTTTAGAAGAGCATGTATTTGTAGATGAATGACAGATTAGGTTTGGTGACAAAGTAACTGTATAATTTGAGGTACTCTACATGAGCATGTGTTTGCCTATTTGATGATCTGTTGTAGTTAATGTTTGATTTTGAGCACATACTTGTTGTGACAATTGCATCAGGTTGAGGGAGAAATGGTCTGTGTGGCCATTGTGAGTGGCACTTCTGATCCAGCAGGTGGTGTTAAGATCCCTCCCTATGTGGCTTTGAATGATGAGCCAGTGTTGGCAAAATGACTTGTGGTCCAGCGGGTGGCGGTGAAATGCCTCCCTATCTATATGACTTGCCCTATTCCTTTGACATTGTTCACTTGATTGGAGATGATTCCGGTCTTCTTCATGAGCACTCCTGCatgtcttccttcctgtcttgccatgtgggttccacggaggtgtgtgtttttgttagatatcactgggcacattcctaacgtggaggtggtttgcatagctcatgtcatgtggatatataaagtattgtattgtaaggtatgttagtctacggacggtctgacattgctcgtccatatattgatgtattccaattgcatttgggtgtattgtgtggaatgttggaacatggttagatattacttgttagacttgactgtgctgttggagctagtaacacaagcatttccgacatctgctaaacaggtgtatgtatatctctctagtcacccccaaaaccaattctttctttggccgcctctccttccagttctctgctgccaatgactggaacgaactacaaaaatctctgaaactggaaacacttatctccctcactagctttaagcaccaactgtcagagcagctcacagattactgcacctgtacatagcccacctataatttaggccaaacaactacctctttccctactgtatttaatgaatttatttattttgctcctttgcaccccattatttttatttctactttgcacatttcttccattgcaaatgtaccattccggtgttttacttgctatattgtatttactttgccaccatggcctttttttgcctttacctcacctcatttgctcacatcgtatatagacttgtttatactgtattattgactgtatgtttgttttactccatgtgtaagtctgtgtcgttgtatgtgtcgaagtgctttgctttatcttggccaggtcgcaattgtaaatgagaacttgttctcaacttgcctacctggttaaataaaggtgaaataaaaaaaagaataaacaaataaatgtgtctatttgattaggattaggacttttcctctatgtgtcgcacttccatttccactttatgtccccgttagggagctgtcatttatgctgcaggctaattactaccaatgtcattgtggtccaagttcaactcctagcctatagggtgtggtaacaggccctctgttatttgttgttgtacTCTGCATGTGAAGTATCTGCACTGCAGCCTATAGAGGAACTAAGCCCTTGATAATAGGGGAACGTAAGCTGTTGAACACAAACTCCCAGTCCTATGATGTTGCTCTGTGAAGGAGGTTAGCTTTTCAGCATTCAATTCCTGGCAGCCTTCTTCTCCCTGGTTGATTTGTGAATGTGAGTGATTCGAGAATGTTTGGCTTGGGTATCCAAGGTGTTTGAGATTGTTGAGGACCAGTGTTCCGAGGGGCTGACTGTGACATCATAAAGCGGAATGTAGTTAGCGTGCTGTTTGAGGGATTCCAATTCAGTCCGTTGCGGCCTTCCAGGCAGTGCAGTTGTGCTTcaagtgtgctctctgtgtgatGACTTGTTGTGCCTACACGGAGTACAGCTACGAACGGACGTGGCATTTGGGGTAAGCCTAAGCCTTTTCGTAACCTTAACCTATTTCTTCTAACTTGCTATGACAAAGTGCTTTGATGACACTAGTTGCATCCCAGCTAGTTGAACGCTTGTCAGTCGTTCTCCTAAAAGGCAACCTCTGTTGCTCGATGTACTAAACCGAGGGCCGGCAGCCACTAAGTACATGTAAGAGACAATTGTGGCAACAATAAGTTGTAAGATGATACCTAGTCACATCTGAGATGTGAATCAACTGCACCGATTGGTCAATCGCCAGTATGTGCCCTTGGGCCTCATTTGTCCCCTTTGAAATGACCTGTTGAGATCATTCAATGCAACATCTGAGGCTCTCTGGCCTATAAAGGATCCACCTCATACCACTATTTCCGTAATATAAGgctatgttattgttttttgaaaaaagtaccatacaatatttgcacatccctatcacctctgtacgcataggaaaatgatccctttattgtgtgtgtgttgggtgggtgtcTGAGGAATGTTTTACTGCATTTCAGCTTGCAGAGGTATCACCACCCGTCCCATGGCCACCTGGATCATGTCtagggaagaaaaagaagaatgacGTTATTACATGGCCTTCAAGAGCTACATGACTGCTGAGGTGACATTACGGACCCCTTAGGATTTGTGGCATTCCTTGTGTATTTGTTTCCCGTTTGTGCCACTTCGTTTCTCCTTTGTACTTGTGACACTATTTGAGGTTTTTAACGCCTATCTCTATTAGGTGTGACTGGCAACTGCAGTGGGTTGAATCCTACtagttcagtgtttcccaactccaggcaGGGGTAGAGTAGGCATTTTTGTTGAAGCCCTGGAGAGGCACAGCTGATTGAAAGAGTTGAATCAggcgcaacaacaacaacaacaagaagaacaacaccaatcaatgtgaagagtgggacatcacagttgggccttgtgttcaacatagctcagtatttgagtgTGTTTCCCGCGCATGCAAGTAGCTTTGATTTCTTCTTCCTCCATAGTTCCCTAGAACGAACGCCCTCCCCTTTGCAGCAGAGGCCAGGCAAAAGCGCGCGCTTTCTGTGCCACTGGCTTCAATCAGGTCCACCAAACGCAGATAATAAGAGCACCGAGCACCGAAAATTACGTCATTAATTCACTTGAACTCAGCTAGTGAACACACGATGTCTGGAAGAGGTAAAGGCGGCAAGGGACTCGGAAAAGGAGGCGCCAAGCGTCACCGTAAGGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCTGCCATTCGCCGTCTGGCTCGCCGTGGCGGCGTGAAGCGTATCTCCGGGCTGATCTACGAGGAGACCCGCGGTGTCCTGAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTTACGGCCATGGACGTGGTCTACGCTCTGAAACGCCAGGGACGCACCCTGTACGGTTTCGGCGGTTAAACGCACTCTTCTCGGAACGTCAACATCCCGACTtgaacccaaaggctcttttaagagccacccacatccgcttcaaaagggtcaaatccattatcgtaggaaaccatgagccactcttgagtggacagggagggagtgttcatgacaggagggaggctatgttcagtgcaggctttgcgtACAGTCGTATTACGAGACACCCGAAATAAAGGCACCACGGCTGAGAAATCCCCACCAAGTACCAAAAAGGGGAGCCTTATTTTTGGccattgtaggacttttttggaaacacaccattccccaccagtgacagagcataggctatggtctttgttagggaagcaagcctctgagtggaaggctcttatgcgcgctcagctccactgggcaaatggcaggggcgcctatgagaaagcaggggtgtgtccacggccggcgaattagcttagcttcgtcttcataagagggaaagggctctccaccccctcattcGTTTGTGAGAAGCAGCGAGACATCAGCATCATGCCCGAGCCAGCAAAGTCCGCGCCCAAGAAGGGCTCCAAGAAAGCCGTCACCAAGACCGCAGGGAAAGGCGGCAAGAAACGCCGAAAGTCGAGGAAGGAGAGCTACGCCATTTACGTGTACAAAGTCCTGAAGCAGGTCCACCCCGATACCGGCATCTCCTCCAAGGCCATGGGAATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGGAGAGTCGTCTCGCCTGGCCCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACCGCAGTGCGCCTGCTGCTCCCCGGAGAGCTGGCCAAGCACGCAGTGTCCACCCCGATACCGGCATCTCCTCCAAGGCCATGGGAATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGGAGAGTCGTCTCGCCTGGCCCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACCGCAGTGCGCCTGCTGCTCCCCGGAGAGCTGGCCAAGCACGCAGTGTCCGAGGGCACCAAGGCCGTGACCAAGTACACCAGCTCCAAGTAAACAGCCCATTTGGAGTGCTGTAgtaacccaaaggctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1661522 lncRNA upstream 6583 43326718 ~ 43326932 (+) True G1452090
TU1661521 lncRNA upstream 6817 43326395 ~ 43326698 (+) True G1452089
TU1661519 lncRNA upstream 12493 43320785 ~ 43321022 (+) True G1452087
TU1661505 lncRNA upstream 14685 43315934 ~ 43318830 (+) True G1452073
TU1661504 lncRNA upstream 15866 43315934 ~ 43317649 (+) False G1452073
TU1661839 lncRNA downstream 60796 43497536 ~ 43497760 (+) True G1452364
TU1661842 lncRNA downstream 63154 43499894 ~ 43505382 (+) False G1452366
TU1661841 lncRNA downstream 67737 43504477 ~ 43517376 (+) True G1452366
TU1661848 lncRNA downstream 71979 43508719 ~ 43552834 (+) False G1452369
TU1661859 lncRNA downstream 71979 43508719 ~ 43562011 (+) False G1452369
XM_036948407.1 mRNA upstream 553 43332315 ~ 43332962 (+) False LOC118940144
LOC110493832 mRNA upstream 2712 43330429 ~ 43330803 (+) True LOC110493832
LOC118940459 mRNA upstream 3496 43319797 ~ 43330019 (+) True LOC118940459
LOC118940518 mRNA upstream 9868 43323528 ~ 43323647 (+) True LOC118940518
XM_021568344.2 mRNA upstream 63255 43260166 ~ 43270260 (+) True LOC110493836
XM_036949944.1 mRNA downstream 2591 43439331 ~ 43441210 (+) True LOC118940461
XM_036948410.1 mRNA downstream 4026 43440766 ~ 43441152 (+) True LOC118940146
XM_036949945.1 mRNA downstream 4766 43441506 ~ 43442036 (+) True LOC118940462
XM_036949948.1 mRNA downstream 9181 43445921 ~ 43458256 (+) True LOC118940465
XM_036949943.1 mRNA downstream 13814 43450554 ~ 43452433 (+) True LOC118940460
TU1659721 other upstream 1443000 41792883 ~ 41890515 (+) True G1450387
TU1659644 other upstream 1639797 41642123 ~ 41693718 (+) True LOC110493897
TU1658524 other upstream 2365449 40949542 ~ 40968066 (+) True LOC110493893
TU1657230 other upstream 3533279 39799936 ~ 39800236 (+) True G1447998
TU1656618 other upstream 3906615 39343027 ~ 39426900 (+) True pmepa1
TU1661834 other downstream 45520 43482260 ~ 43483693 (+) True G1452359
TU1661837 other downstream 54434 43491174 ~ 43492068 (+) True G1452362
TU1661856 other downstream 104924 43541664 ~ 43563701 (+) False G1452369
TU1661935 other downstream 169573 43606313 ~ 43606781 (+) True G1452399
TU1662359 other downstream 1076329 44513069 ~ 44520477 (+) True G1452804

Expression Profile